miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18709 5' -57 NC_004682.1 + 130 0.66 0.614614
Target:  5'- -gGGCUcGACCg---CcGGCACGGGCc -3'
miRNA:   3'- agCUGGaCUGGaugaGuCCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 1723 0.67 0.52865
Target:  5'- gUCGGCuCUGuCCUACgUC-GGCACGccgaccGGCa -3'
miRNA:   3'- -AGCUG-GACuGGAUG-AGuCCGUGC------CCG- -5'
18709 5' -57 NC_004682.1 + 1838 0.66 0.621154
Target:  5'- cCGuCCgGGCguCUGCUCGGGCuccccggccccauCGGGCc -3'
miRNA:   3'- aGCuGGaCUG--GAUGAGUCCGu------------GCCCG- -5'
18709 5' -57 NC_004682.1 + 2941 0.77 0.133199
Target:  5'- aUGaACCUGAUCgACUUcugGGGCGCGGGCg -3'
miRNA:   3'- aGC-UGGACUGGaUGAG---UCCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 3177 0.67 0.539199
Target:  5'- aCGGCg-GGCCa----GGGCGCGGGCa -3'
miRNA:   3'- aGCUGgaCUGGaugagUCCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 4697 0.67 0.560504
Target:  5'- gUCGGCCUGAUCgag-CAGGUGCuGGa -3'
miRNA:   3'- -AGCUGGACUGGaugaGUCCGUGcCCg -5'
18709 5' -57 NC_004682.1 + 6330 0.66 0.592864
Target:  5'- cCGACCcgcugGGuCCgggACUCcccgccgacacGGCGCGGGCg -3'
miRNA:   3'- aGCUGGa----CU-GGa--UGAGu----------CCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 6497 0.67 0.560504
Target:  5'- gUCaACCUGGCgggCUACUCgcaAGGCGCGGuGg -3'
miRNA:   3'- -AGcUGGACUG---GAUGAG---UCCGUGCC-Cg -5'
18709 5' -57 NC_004682.1 + 7126 0.67 0.560504
Target:  5'- gCGGCUgguACCUgcccgagaagacGCUC-GGCugGGGCg -3'
miRNA:   3'- aGCUGGac-UGGA------------UGAGuCCGugCCCG- -5'
18709 5' -57 NC_004682.1 + 7300 0.68 0.497488
Target:  5'- gCGAgggcauCCUGcGCCgcCUCaaGGGCugGGGCa -3'
miRNA:   3'- aGCU------GGAC-UGGauGAG--UCCGugCCCG- -5'
18709 5' -57 NC_004682.1 + 8160 0.69 0.418892
Target:  5'- gUGACCgGAUCacGCUCGGGUucgACGGGUc -3'
miRNA:   3'- aGCUGGaCUGGa-UGAGUCCG---UGCCCG- -5'
18709 5' -57 NC_004682.1 + 11497 0.68 0.497488
Target:  5'- cCGGCgUucGACCccACUCAgGGCuCGGGCa -3'
miRNA:   3'- aGCUGgA--CUGGa-UGAGU-CCGuGCCCG- -5'
18709 5' -57 NC_004682.1 + 12083 0.67 0.52865
Target:  5'- --aACCUGACCacgGCgUCGGGUccGCaGGGCa -3'
miRNA:   3'- agcUGGACUGGa--UG-AGUCCG--UG-CCCG- -5'
18709 5' -57 NC_004682.1 + 12566 0.71 0.308705
Target:  5'- gUGAagCUGACCgAC-CAGGuCGCGGGCa -3'
miRNA:   3'- aGCUg-GACUGGaUGaGUCC-GUGCCCG- -5'
18709 5' -57 NC_004682.1 + 16795 0.66 0.629879
Target:  5'- cUCGGCCUGACCcgUAUggguugguuggucaCAGGCGucuuCGuGGCg -3'
miRNA:   3'- -AGCUGGACUGG--AUGa-------------GUCCGU----GC-CCG- -5'
18709 5' -57 NC_004682.1 + 17238 0.68 0.497488
Target:  5'- cUGAcCCUGGCCaGCUCGGGCuccgACGccuucGGCu -3'
miRNA:   3'- aGCU-GGACUGGaUGAGUCCG----UGC-----CCG- -5'
18709 5' -57 NC_004682.1 + 18355 0.66 0.592864
Target:  5'- -aGGCUgggUGAgCUACUCGGGuCAgucugUGGGCg -3'
miRNA:   3'- agCUGG---ACUgGAUGAGUCC-GU-----GCCCG- -5'
18709 5' -57 NC_004682.1 + 20336 0.72 0.301208
Target:  5'- cCGACgaGACCUGCUCcacaCGCGGGUc -3'
miRNA:   3'- aGCUGgaCUGGAUGAGucc-GUGCCCG- -5'
18709 5' -57 NC_004682.1 + 21290 0.74 0.22438
Target:  5'- aCGgcuGCCUGGUCUgggacaucaucgacaACUCGGGCugGGGCa -3'
miRNA:   3'- aGC---UGGACUGGA---------------UGAGUCCGugCCCG- -5'
18709 5' -57 NC_004682.1 + 24076 1.12 0.000358
Target:  5'- uUCGACCUGACCUACUCAGGCACGGGCa -3'
miRNA:   3'- -AGCUGGACUGGAUGAGUCCGUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.