miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18709 5' -57 NC_004682.1 + 24194 0.67 0.52865
Target:  5'- -aGACgCUGACCgACUacCAGaGCAucuCGGGCa -3'
miRNA:   3'- agCUG-GACUGGaUGA--GUC-CGU---GCCCG- -5'
18709 5' -57 NC_004682.1 + 27934 0.66 0.625516
Target:  5'- cCGGgCUGGCCU--UCGGGCuggucCGGGg -3'
miRNA:   3'- aGCUgGACUGGAugAGUCCGu----GCCCg -5'
18709 5' -57 NC_004682.1 + 30483 0.67 0.571244
Target:  5'- uUCGACCgGGCCUACcCcGGCGugcaGcGGCu -3'
miRNA:   3'- -AGCUGGaCUGGAUGaGuCCGUg---C-CCG- -5'
18709 5' -57 NC_004682.1 + 33616 0.66 0.624426
Target:  5'- gCGAgCUGuuC-ACUCGGGUccagaacGCGGGCc -3'
miRNA:   3'- aGCUgGACugGaUGAGUCCG-------UGCCCG- -5'
18709 5' -57 NC_004682.1 + 33731 0.66 0.582034
Target:  5'- gUCGugUUGACCU--UCAagggcGGCAcCGGGUu -3'
miRNA:   3'- -AGCugGACUGGAugAGU-----CCGU-GCCCG- -5'
18709 5' -57 NC_004682.1 + 35880 0.66 0.592864
Target:  5'- -aGACCUGGCCggaaacGGUGCGGcGCg -3'
miRNA:   3'- agCUGGACUGGaugaguCCGUGCC-CG- -5'
18709 5' -57 NC_004682.1 + 36747 0.68 0.457286
Target:  5'- aUCGGuCCuUGGCCUucgGCUCcaGGGCGaGGGCc -3'
miRNA:   3'- -AGCU-GG-ACUGGA---UGAG--UCCGUgCCCG- -5'
18709 5' -57 NC_004682.1 + 36804 0.66 0.614614
Target:  5'- -gGACCgauuCCUGgUCAGG-AUGGGCc -3'
miRNA:   3'- agCUGGacu-GGAUgAGUCCgUGCCCG- -5'
18709 5' -57 NC_004682.1 + 37372 0.66 0.603728
Target:  5'- aUCGACCUGcuGCCUGagUUCAacaagaucGCAcCGGGCu -3'
miRNA:   3'- -AGCUGGAC--UGGAU--GAGUc-------CGU-GCCCG- -5'
18709 5' -57 NC_004682.1 + 38657 0.67 0.518177
Target:  5'- cCGugCUccugcGACCaGCgCAGGUACGGGa -3'
miRNA:   3'- aGCugGA-----CUGGaUGaGUCCGUGCCCg -5'
18709 5' -57 NC_004682.1 + 38815 0.72 0.286638
Target:  5'- aCGACCUgGACaaguucaUGCUCGGGUACGuGGa -3'
miRNA:   3'- aGCUGGA-CUGg------AUGAGUCCGUGC-CCg -5'
18709 5' -57 NC_004682.1 + 39370 0.67 0.527599
Target:  5'- gUCGACCacGACC-ACgaaaCAGGCAUcgucaggGGGCu -3'
miRNA:   3'- -AGCUGGa-CUGGaUGa---GUCCGUG-------CCCG- -5'
18709 5' -57 NC_004682.1 + 40993 0.69 0.408681
Target:  5'- gCGGCCUGGCCaGCUCGGugccguagugcuuGCGCucgaucacgauGGGCc -3'
miRNA:   3'- aGCUGGACUGGaUGAGUC-------------CGUG-----------CCCG- -5'
18709 5' -57 NC_004682.1 + 41897 0.7 0.365139
Target:  5'- uUCGuCCUGACCUACgcgcugCuGGCGCGaGUc -3'
miRNA:   3'- -AGCuGGACUGGAUGa-----GuCCGUGCcCG- -5'
18709 5' -57 NC_004682.1 + 42753 0.66 0.625516
Target:  5'- aCGGCUgggucagGACgUGCcacgCGGGCAgacCGGGCu -3'
miRNA:   3'- aGCUGGa------CUGgAUGa---GUCCGU---GCCCG- -5'
18709 5' -57 NC_004682.1 + 46365 0.7 0.385174
Target:  5'- aCGGCCagagggaUGGCCgcaacgccgcguucGCUCGGGCGCuGGCg -3'
miRNA:   3'- aGCUGG-------ACUGGa-------------UGAGUCCGUGcCCG- -5'
18709 5' -57 NC_004682.1 + 46974 0.66 0.614614
Target:  5'- uUCGAgCUGAUC-GC-CAaGUACGGGCu -3'
miRNA:   3'- -AGCUgGACUGGaUGaGUcCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 48712 0.67 0.549819
Target:  5'- gUCGACCaGACCUucGCagaAGGCAa-GGCg -3'
miRNA:   3'- -AGCUGGaCUGGA--UGag-UCCGUgcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.