Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18709 | 5' | -57 | NC_004682.1 | + | 48712 | 0.67 | 0.549819 |
Target: 5'- gUCGACCaGACCUucGCagaAGGCAa-GGCg -3' miRNA: 3'- -AGCUGGaCUGGA--UGag-UCCGUgcCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 46974 | 0.66 | 0.614614 |
Target: 5'- uUCGAgCUGAUC-GC-CAaGUACGGGCu -3' miRNA: 3'- -AGCUgGACUGGaUGaGUcCGUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 46365 | 0.7 | 0.385174 |
Target: 5'- aCGGCCagagggaUGGCCgcaacgccgcguucGCUCGGGCGCuGGCg -3' miRNA: 3'- aGCUGG-------ACUGGa-------------UGAGUCCGUGcCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 42753 | 0.66 | 0.625516 |
Target: 5'- aCGGCUgggucagGACgUGCcacgCGGGCAgacCGGGCu -3' miRNA: 3'- aGCUGGa------CUGgAUGa---GUCCGU---GCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 41897 | 0.7 | 0.365139 |
Target: 5'- uUCGuCCUGACCUACgcgcugCuGGCGCGaGUc -3' miRNA: 3'- -AGCuGGACUGGAUGa-----GuCCGUGCcCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 40993 | 0.69 | 0.408681 |
Target: 5'- gCGGCCUGGCCaGCUCGGugccguagugcuuGCGCucgaucacgauGGGCc -3' miRNA: 3'- aGCUGGACUGGaUGAGUC-------------CGUG-----------CCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 39370 | 0.67 | 0.527599 |
Target: 5'- gUCGACCacGACC-ACgaaaCAGGCAUcgucaggGGGCu -3' miRNA: 3'- -AGCUGGa-CUGGaUGa---GUCCGUG-------CCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 38815 | 0.72 | 0.286638 |
Target: 5'- aCGACCUgGACaaguucaUGCUCGGGUACGuGGa -3' miRNA: 3'- aGCUGGA-CUGg------AUGAGUCCGUGC-CCg -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 38657 | 0.67 | 0.518177 |
Target: 5'- cCGugCUccugcGACCaGCgCAGGUACGGGa -3' miRNA: 3'- aGCugGA-----CUGGaUGaGUCCGUGCCCg -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 37372 | 0.66 | 0.603728 |
Target: 5'- aUCGACCUGcuGCCUGagUUCAacaagaucGCAcCGGGCu -3' miRNA: 3'- -AGCUGGAC--UGGAU--GAGUc-------CGU-GCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 36804 | 0.66 | 0.614614 |
Target: 5'- -gGACCgauuCCUGgUCAGG-AUGGGCc -3' miRNA: 3'- agCUGGacu-GGAUgAGUCCgUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 36747 | 0.68 | 0.457286 |
Target: 5'- aUCGGuCCuUGGCCUucgGCUCcaGGGCGaGGGCc -3' miRNA: 3'- -AGCU-GG-ACUGGA---UGAG--UCCGUgCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 35880 | 0.66 | 0.592864 |
Target: 5'- -aGACCUGGCCggaaacGGUGCGGcGCg -3' miRNA: 3'- agCUGGACUGGaugaguCCGUGCC-CG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 33731 | 0.66 | 0.582034 |
Target: 5'- gUCGugUUGACCU--UCAagggcGGCAcCGGGUu -3' miRNA: 3'- -AGCugGACUGGAugAGU-----CCGU-GCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 33616 | 0.66 | 0.624426 |
Target: 5'- gCGAgCUGuuC-ACUCGGGUccagaacGCGGGCc -3' miRNA: 3'- aGCUgGACugGaUGAGUCCG-------UGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 30483 | 0.67 | 0.571244 |
Target: 5'- uUCGACCgGGCCUACcCcGGCGugcaGcGGCu -3' miRNA: 3'- -AGCUGGaCUGGAUGaGuCCGUg---C-CCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 27934 | 0.66 | 0.625516 |
Target: 5'- cCGGgCUGGCCU--UCGGGCuggucCGGGg -3' miRNA: 3'- aGCUgGACUGGAugAGUCCGu----GCCCg -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 24194 | 0.67 | 0.52865 |
Target: 5'- -aGACgCUGACCgACUacCAGaGCAucuCGGGCa -3' miRNA: 3'- agCUG-GACUGGaUGA--GUC-CGU---GCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 24076 | 1.12 | 0.000358 |
Target: 5'- uUCGACCUGACCUACUCAGGCACGGGCa -3' miRNA: 3'- -AGCUGGACUGGAUGAGUCCGUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 21290 | 0.74 | 0.22438 |
Target: 5'- aCGgcuGCCUGGUCUgggacaucaucgacaACUCGGGCugGGGCa -3' miRNA: 3'- aGC---UGGACUGGA---------------UGAGUCCGugCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home