miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1871 3' -57.7 NC_001347.2 + 56600 0.66 0.912936
Target:  5'- cACGACcGCGguGGCGGCG-GUgGUUc -3'
miRNA:   3'- uUGCUGuCGUguCUGCCGCaCGgCAG- -5'
1871 3' -57.7 NC_001347.2 + 56747 0.66 0.912936
Target:  5'- uGGCGGCGGCGguGGUGGCGgcaGCC-UCu -3'
miRNA:   3'- -UUGCUGUCGUguCUGCCGCa--CGGcAG- -5'
1871 3' -57.7 NC_001347.2 + 47523 0.66 0.912936
Target:  5'- uACGuCGGCGCAGguaGCGGCuggGCUGUUc -3'
miRNA:   3'- uUGCuGUCGUGUC---UGCCGca-CGGCAG- -5'
1871 3' -57.7 NC_001347.2 + 74999 0.66 0.907075
Target:  5'- uAGCGGCGGCgACGGAgcUGGUGgacgggGCCGg- -3'
miRNA:   3'- -UUGCUGUCG-UGUCU--GCCGCa-----CGGCag -5'
1871 3' -57.7 NC_001347.2 + 122083 0.66 0.907075
Target:  5'- --aGGCAGCAUGGAguCGcGCGgucGCCGUUg -3'
miRNA:   3'- uugCUGUCGUGUCU--GC-CGCa--CGGCAG- -5'
1871 3' -57.7 NC_001347.2 + 228121 0.66 0.907075
Target:  5'- cGCGGCAGCAgCAG-CGGC--GCCGa- -3'
miRNA:   3'- uUGCUGUCGU-GUCuGCCGcaCGGCag -5'
1871 3' -57.7 NC_001347.2 + 152975 0.66 0.907075
Target:  5'- gGGCGugGGC-C--GCGGCGUggaugacgagGCCGUCa -3'
miRNA:   3'- -UUGCugUCGuGucUGCCGCA----------CGGCAG- -5'
1871 3' -57.7 NC_001347.2 + 19901 0.66 0.907075
Target:  5'- cGACGGCAGUuCGGgugauACGGCGUgauGCUGUg -3'
miRNA:   3'- -UUGCUGUCGuGUC-----UGCCGCA---CGGCAg -5'
1871 3' -57.7 NC_001347.2 + 209975 0.66 0.905877
Target:  5'- aGACGACGGUcgcugccACAGcaGCGGCGUcGCCccaguucGUCu -3'
miRNA:   3'- -UUGCUGUCG-------UGUC--UGCCGCA-CGG-------CAG- -5'
1871 3' -57.7 NC_001347.2 + 71653 0.66 0.901611
Target:  5'- cGCGACAGCuguuuggaaagcgaGGACGGCGccccGCUGUg -3'
miRNA:   3'- uUGCUGUCGug------------UCUGCCGCa---CGGCAg -5'
1871 3' -57.7 NC_001347.2 + 153250 0.66 0.900993
Target:  5'- -uCGAC-GCAgGGcACGcGCGUGCCGcCg -3'
miRNA:   3'- uuGCUGuCGUgUC-UGC-CGCACGGCaG- -5'
1871 3' -57.7 NC_001347.2 + 190608 0.66 0.900993
Target:  5'- cAGCGACGuGCACGG-C-GCGUGCUGg- -3'
miRNA:   3'- -UUGCUGU-CGUGUCuGcCGCACGGCag -5'
1871 3' -57.7 NC_001347.2 + 190783 0.66 0.900993
Target:  5'- cGCGACcaaggGGCGgGGggcGCGGCGacaUGCCGUUg -3'
miRNA:   3'- uUGCUG-----UCGUgUC---UGCCGC---ACGGCAG- -5'
1871 3' -57.7 NC_001347.2 + 102873 0.66 0.89469
Target:  5'- uACGGCuGCGC-GACGGCGUcuCCGgUCu -3'
miRNA:   3'- uUGCUGuCGUGuCUGCCGCAc-GGC-AG- -5'
1871 3' -57.7 NC_001347.2 + 22187 0.66 0.881438
Target:  5'- gAugGGC-GCACcGACGGCGgaGCCG-Cg -3'
miRNA:   3'- -UugCUGuCGUGuCUGCCGCa-CGGCaG- -5'
1871 3' -57.7 NC_001347.2 + 1712 0.67 0.874495
Target:  5'- cGCGGCAGCGUAcGACGuuccagucaGCGagGCCGUCg -3'
miRNA:   3'- uUGCUGUCGUGU-CUGC---------CGCa-CGGCAG- -5'
1871 3' -57.7 NC_001347.2 + 166465 0.67 0.874495
Target:  5'- aAGCGGCGGCGgcGAUGGCGggGCUGg- -3'
miRNA:   3'- -UUGCUGUCGUguCUGCCGCa-CGGCag -5'
1871 3' -57.7 NC_001347.2 + 183169 0.67 0.867348
Target:  5'- -cCGAUGGUAUGGGCGGCGgcggcaaugGCCG-Cg -3'
miRNA:   3'- uuGCUGUCGUGUCUGCCGCa--------CGGCaG- -5'
1871 3' -57.7 NC_001347.2 + 153213 0.67 0.858508
Target:  5'- aAGCGGCAGCggcgGCAGAagaggaGGCGgaggagugaacgGUCGUCg -3'
miRNA:   3'- -UUGCUGUCG----UGUCUg-----CCGCa-----------CGGCAG- -5'
1871 3' -57.7 NC_001347.2 + 208290 0.67 0.852459
Target:  5'- uGACGACGGguCGGAUacaGG-GUGCCGcCa -3'
miRNA:   3'- -UUGCUGUCguGUCUG---CCgCACGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.