miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1871 5' -55.7 NC_001347.2 + 163360 0.66 0.977174
Target:  5'- uGCGGCggcaaCGGG-CGCgAcACcGGCGACGg -3'
miRNA:   3'- -CGCUGa----GCCCuGCGgU-UGaCUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 183234 0.66 0.977174
Target:  5'- -aGGC-CGGcGACGUUAACUGcuacagcuGCGGCGg -3'
miRNA:   3'- cgCUGaGCC-CUGCGGUUGAC--------UGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 198360 0.66 0.977174
Target:  5'- --aGCUCGGGGCgugaucGCCAuCUGuAUGGCGa -3'
miRNA:   3'- cgcUGAGCCCUG------CGGUuGAC-UGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 74881 0.66 0.974786
Target:  5'- gGCGA-UCGGcGcCGCUGAUUGAgGACGc -3'
miRNA:   3'- -CGCUgAGCC-CuGCGGUUGACUgCUGC- -5'
1871 5' -55.7 NC_001347.2 + 85787 0.66 0.969474
Target:  5'- gGCGAUgucgGGGACGgguaCGACUuuGAUGACGg -3'
miRNA:   3'- -CGCUGag--CCCUGCg---GUUGA--CUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 61975 0.66 0.969474
Target:  5'- cGCGgcGCUCGGucGACGCguuguuACUGGCGAUc -3'
miRNA:   3'- -CGC--UGAGCC--CUGCGgu----UGACUGCUGc -5'
1871 5' -55.7 NC_001347.2 + 222399 0.66 0.969474
Target:  5'- aGUGAC-CaGGugGUCAG-UGGCGGCGa -3'
miRNA:   3'- -CGCUGaGcCCugCGGUUgACUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 152344 0.66 0.966538
Target:  5'- aGCGGCU-GGaGGCG-CAGCUGcGCGGCa -3'
miRNA:   3'- -CGCUGAgCC-CUGCgGUUGAC-UGCUGc -5'
1871 5' -55.7 NC_001347.2 + 119692 0.66 0.966538
Target:  5'- uGCGACUgacCGuaACGCCgAACUGGCGcCGc -3'
miRNA:   3'- -CGCUGA---GCccUGCGG-UUGACUGCuGC- -5'
1871 5' -55.7 NC_001347.2 + 192272 0.66 0.966538
Target:  5'- cGCGGCcUCGgcggcGGGCGCCGACUcGCGuCc -3'
miRNA:   3'- -CGCUG-AGC-----CCUGCGGUUGAcUGCuGc -5'
1871 5' -55.7 NC_001347.2 + 77896 0.66 0.966234
Target:  5'- uGCGACggCGGGuggagaugaggcgGCGUgGACUGG-GACGa -3'
miRNA:   3'- -CGCUGa-GCCC-------------UGCGgUUGACUgCUGC- -5'
1871 5' -55.7 NC_001347.2 + 47832 0.66 0.966234
Target:  5'- aGCGAaacagaaUUCGGaGAUGCUGAg-GACGACGa -3'
miRNA:   3'- -CGCU-------GAGCC-CUGCGGUUgaCUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 87718 0.66 0.963408
Target:  5'- gGCGGCgucggCGGGA-G-CAGCgggGGCGGCGg -3'
miRNA:   3'- -CGCUGa----GCCCUgCgGUUGa--CUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 216759 0.66 0.963408
Target:  5'- gGCGGCcCGGGcCGCCGuGCUGGagGGCc -3'
miRNA:   3'- -CGCUGaGCCCuGCGGU-UGACUg-CUGc -5'
1871 5' -55.7 NC_001347.2 + 216248 0.66 0.963408
Target:  5'- aGUGGCUCGGacCGCCGGCUGuuuCuGCGc -3'
miRNA:   3'- -CGCUGAGCCcuGCGGUUGACu--GcUGC- -5'
1871 5' -55.7 NC_001347.2 + 29139 0.66 0.963408
Target:  5'- uUGACU-GuGACGCCAcgAgUGACGACGa -3'
miRNA:   3'- cGCUGAgCcCUGCGGU--UgACUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 112423 0.67 0.96008
Target:  5'- gGCGACcgcgucagaCGGGGCGaCCAcgucagACggGGCGGCGg -3'
miRNA:   3'- -CGCUGa--------GCCCUGC-GGU------UGa-CUGCUGC- -5'
1871 5' -55.7 NC_001347.2 + 72107 0.67 0.95281
Target:  5'- cGCGcGCUCGcuGGugGCCGugguCUGuCGGCa -3'
miRNA:   3'- -CGC-UGAGC--CCugCGGUu---GACuGCUGc -5'
1871 5' -55.7 NC_001347.2 + 117509 0.67 0.95281
Target:  5'- aCGACg-GGGGCGCCGuagGACG-CGg -3'
miRNA:   3'- cGCUGagCCCUGCGGUugaCUGCuGC- -5'
1871 5' -55.7 NC_001347.2 + 229025 0.67 0.95281
Target:  5'- cGCGACgCGGGcACGCUGcugccGCUcgGACGGCc -3'
miRNA:   3'- -CGCUGaGCCC-UGCGGU-----UGA--CUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.