miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18710 3' -54.8 NC_004682.1 + 33580 0.66 0.703492
Target:  5'- gUUGUCGCCGaccaucuGCUCGuaGGCGUCCu- -3'
miRNA:   3'- -AGUAGCGGCg------UGAGUugUCGCAGGuu -5'
18710 3' -54.8 NC_004682.1 + 32393 0.66 0.703492
Target:  5'- -uGUCGCCGUAgaCgAGCAGCGaguucUCCGAc -3'
miRNA:   3'- agUAGCGGCGUgaG-UUGUCGC-----AGGUU- -5'
18710 3' -54.8 NC_004682.1 + 46058 0.66 0.692413
Target:  5'- cUCGUCGUCGCAg-CGGCAGUGcuggucUCCGc -3'
miRNA:   3'- -AGUAGCGGCGUgaGUUGUCGC------AGGUu -5'
18710 3' -54.8 NC_004682.1 + 8599 0.66 0.685736
Target:  5'- -gGUUGCCGUcguggaagaccucuuGCUCGAUcaccGCGUCCAGg -3'
miRNA:   3'- agUAGCGGCG---------------UGAGUUGu---CGCAGGUU- -5'
18710 3' -54.8 NC_004682.1 + 26172 0.66 0.676803
Target:  5'- cUCGUCGCCccGCAUcgagaugccguugCAguugaGCGGCGUCCGAc -3'
miRNA:   3'- -AGUAGCGG--CGUGa------------GU-----UGUCGCAGGUU- -5'
18710 3' -54.8 NC_004682.1 + 46762 0.66 0.670084
Target:  5'- cCggUGCUGCACaUCuuCGGCGUCCc- -3'
miRNA:   3'- aGuaGCGGCGUG-AGuuGUCGCAGGuu -5'
18710 3' -54.8 NC_004682.1 + 35162 0.66 0.658858
Target:  5'- cCAUCGCCGCGauaccgGugAGCuGUCCAc -3'
miRNA:   3'- aGUAGCGGCGUgag---UugUCG-CAGGUu -5'
18710 3' -54.8 NC_004682.1 + 14427 0.66 0.658858
Target:  5'- gCGUCGUagaGCGCuUCGAgAGCGUCUu- -3'
miRNA:   3'- aGUAGCGg--CGUG-AGUUgUCGCAGGuu -5'
18710 3' -54.8 NC_004682.1 + 21652 0.67 0.636338
Target:  5'- cUCAccUCGCUGaucaACUCGGCgauGGCGUCCc- -3'
miRNA:   3'- -AGU--AGCGGCg---UGAGUUG---UCGCAGGuu -5'
18710 3' -54.8 NC_004682.1 + 29321 0.67 0.602555
Target:  5'- uUCAUCGCCGCcgUCcACGGCuGUCUc- -3'
miRNA:   3'- -AGUAGCGGCGugAGuUGUCG-CAGGuu -5'
18710 3' -54.8 NC_004682.1 + 30633 0.68 0.535943
Target:  5'- aUCAUCGuCCGguCgccCGACAGCGcggCCAGg -3'
miRNA:   3'- -AGUAGC-GGCguGa--GUUGUCGCa--GGUU- -5'
18710 3' -54.8 NC_004682.1 + 24363 0.68 0.534852
Target:  5'- cCAUCGCguagaCGUAgCUCGucuuggcggcguuGCAGCGUCCGAa -3'
miRNA:   3'- aGUAGCG-----GCGU-GAGU-------------UGUCGCAGGUU- -5'
18710 3' -54.8 NC_004682.1 + 45508 0.68 0.525067
Target:  5'- cUCAgcgaugugCGCCGCACU--GCGGUGUUCAc -3'
miRNA:   3'- -AGUa-------GCGGCGUGAguUGUCGCAGGUu -5'
18710 3' -54.8 NC_004682.1 + 17574 0.69 0.514276
Target:  5'- aUCGUCaCgGCGCUCAcgcCAGCGUUCAc -3'
miRNA:   3'- -AGUAGcGgCGUGAGUu--GUCGCAGGUu -5'
18710 3' -54.8 NC_004682.1 + 23553 0.69 0.492974
Target:  5'- -gAUCGCCGgaaGCUCGaacaucucccggACGGCGUCCu- -3'
miRNA:   3'- agUAGCGGCg--UGAGU------------UGUCGCAGGuu -5'
18710 3' -54.8 NC_004682.1 + 5882 0.7 0.421943
Target:  5'- aCGUCGagCGCguuGCUCGcgACGGCGUCCAc -3'
miRNA:   3'- aGUAGCg-GCG---UGAGU--UGUCGCAGGUu -5'
18710 3' -54.8 NC_004682.1 + 30745 0.7 0.421943
Target:  5'- -aGUCGCCGC--UgGGCAGCGUCUGAg -3'
miRNA:   3'- agUAGCGGCGugAgUUGUCGCAGGUU- -5'
18710 3' -54.8 NC_004682.1 + 9538 0.71 0.393439
Target:  5'- -aGUCGCCuGCAUcagCAuCAGCGUCCGGg -3'
miRNA:   3'- agUAGCGG-CGUGa--GUuGUCGCAGGUU- -5'
18710 3' -54.8 NC_004682.1 + 46122 0.75 0.237299
Target:  5'- uUCGUgGCCGCG-UCGGCAGCG-CCGAg -3'
miRNA:   3'- -AGUAgCGGCGUgAGUUGUCGCaGGUU- -5'
18710 3' -54.8 NC_004682.1 + 12876 0.78 0.136514
Target:  5'- aCAU-GCCGUACgCAACGGCGUCCGAc -3'
miRNA:   3'- aGUAgCGGCGUGaGUUGUCGCAGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.