Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18710 | 5' | -59 | NC_004682.1 | + | 2957 | 0.67 | 0.432547 |
Target: 5'- -uCUGg-GGCGCgGgcgGCGGCGCuGGGCa -3' miRNA: 3'- ccGACagCCGUGgCa--UGCCGCG-CUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 16176 | 0.67 | 0.432547 |
Target: 5'- cGGCgagGUCGGCAU----UGGCGCGAa- -3' miRNA: 3'- -CCGa--CAGCCGUGgcauGCCGCGCUcg -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 9393 | 0.68 | 0.423263 |
Target: 5'- cGGCUGUCGG-ACCucUACGGCaCGAc- -3' miRNA: 3'- -CCGACAGCCgUGGc-AUGCCGcGCUcg -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 25293 | 0.68 | 0.4141 |
Target: 5'- cGGCUc---GCGCCGUACGGUGCcgacAGCc -3' miRNA: 3'- -CCGAcagcCGUGGCAUGCCGCGc---UCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 45541 | 0.68 | 0.4141 |
Target: 5'- aGUUGgaccCGccuGCGCCGgggcCGGCGUGAGCa -3' miRNA: 3'- cCGACa---GC---CGUGGCau--GCCGCGCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 7518 | 0.68 | 0.403266 |
Target: 5'- uGGCUGaCGGCGgCGauggugauccacGCGGCGUG-GCg -3' miRNA: 3'- -CCGACaGCCGUgGCa-----------UGCCGCGCuCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 4470 | 0.68 | 0.387357 |
Target: 5'- aGCuUGUCGGCACCGcGCuccGCGCccguGGCg -3' miRNA: 3'- cCG-ACAGCCGUGGCaUGc--CGCGc---UCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 8950 | 0.69 | 0.360943 |
Target: 5'- uGCUGg-GGgACCGUgacgccuACGGCGuCGGGCc -3' miRNA: 3'- cCGACagCCgUGGCA-------UGCCGC-GCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 11215 | 0.69 | 0.349433 |
Target: 5'- cGGCUGaacgucucgaccuUCGGCuccuggccuugguCCGUcGCGGCGgGGGUa -3' miRNA: 3'- -CCGAC-------------AGCCGu------------GGCA-UGCCGCgCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 40680 | 0.69 | 0.337393 |
Target: 5'- cGGCacgCGGCACUGcAUGGCuCGGGCc -3' miRNA: 3'- -CCGacaGCCGUGGCaUGCCGcGCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 15859 | 0.7 | 0.329536 |
Target: 5'- cGCUgGUCGcaAUCGUcaacGCGGUGCGAGCa -3' miRNA: 3'- cCGA-CAGCcgUGGCA----UGCCGCGCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 38106 | 0.7 | 0.314229 |
Target: 5'- cGCUGUCGGCGCUGaggcaccuCGGCacCGAGg -3' miRNA: 3'- cCGACAGCCGUGGCau------GCCGc-GCUCg -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 5163 | 0.7 | 0.309743 |
Target: 5'- cGGggGUCGGUgcgggugcgggagcaGCCgGUGCGGCGUcGGCg -3' miRNA: 3'- -CCgaCAGCCG---------------UGG-CAUGCCGCGcUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 16899 | 0.7 | 0.30678 |
Target: 5'- cGGCgcguUCGGUGCCGguguCGGCGCuguGGCg -3' miRNA: 3'- -CCGac--AGCCGUGGCau--GCCGCGc--UCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 214 | 0.7 | 0.30678 |
Target: 5'- uGGCccugUGcCGGC-CCGUGcCGGCGguCGAGCc -3' miRNA: 3'- -CCG----ACaGCCGuGGCAU-GCCGC--GCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 19333 | 0.7 | 0.304571 |
Target: 5'- uGGCUGUCgagggacucggaauGGCGCaa---GGCGUGGGCg -3' miRNA: 3'- -CCGACAG--------------CCGUGgcaugCCGCGCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 2916 | 0.7 | 0.299466 |
Target: 5'- gGGCaG-CGGCG-CGUGCGGCaaGGGCa -3' miRNA: 3'- -CCGaCaGCCGUgGCAUGCCGcgCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 28099 | 0.7 | 0.292288 |
Target: 5'- gGGCg--UGGCugCucGCGGCGgCGAGCg -3' miRNA: 3'- -CCGacaGCCGugGcaUGCCGC-GCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 3044 | 0.71 | 0.264923 |
Target: 5'- cGGCacUGUCGGacaaggcagGCCGUccaacggaACgGGCGCGAGCc -3' miRNA: 3'- -CCG--ACAGCCg--------UGGCA--------UG-CCGCGCUCG- -5' |
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18710 | 5' | -59 | NC_004682.1 | + | 46328 | 0.72 | 0.23368 |
Target: 5'- uGCUGUCGaaGCgCGUGCGGCccCGAGCc -3' miRNA: 3'- cCGACAGCcgUG-GCAUGCCGc-GCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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