miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18711 3' -62.5 NC_004682.1 + 26718 0.66 0.351877
Target:  5'- gGUGUCGAGGCCCuuccccuuccccgaGGgGUGauccacgauccugaaGCCCAg -3'
miRNA:   3'- gCGCAGUUCCGGGug------------CCgCAC---------------CGGGU- -5'
18711 3' -62.5 NC_004682.1 + 33874 0.66 0.347856
Target:  5'- cCGaCGaCGAGGCCCA-GGCGgcucccgccgaGGCCCc -3'
miRNA:   3'- -GC-GCaGUUCCGGGUgCCGCa----------CCGGGu -5'
18711 3' -62.5 NC_004682.1 + 17065 0.66 0.332104
Target:  5'- uGC-UCAcgacGGGCaugCAgGGCGUGGCUCAg -3'
miRNA:   3'- gCGcAGU----UCCGg--GUgCCGCACCGGGU- -5'
18711 3' -62.5 NC_004682.1 + 30569 0.66 0.332104
Target:  5'- -uCGgCAGGGUCUACGGCGgUGGUgCCAa -3'
miRNA:   3'- gcGCaGUUCCGGGUGCCGC-ACCG-GGU- -5'
18711 3' -62.5 NC_004682.1 + 40571 0.66 0.324427
Target:  5'- cCGUGguugacgacCGGGauGCCgGCGGCGaUGGCCCGa -3'
miRNA:   3'- -GCGCa--------GUUC--CGGgUGCCGC-ACCGGGU- -5'
18711 3' -62.5 NC_004682.1 + 20025 0.67 0.292929
Target:  5'- aGCaUCGGGGCCgGCaaccugacgguaucGG-GUGGCCCAa -3'
miRNA:   3'- gCGcAGUUCCGGgUG--------------CCgCACCGGGU- -5'
18711 3' -62.5 NC_004682.1 + 12063 0.67 0.279113
Target:  5'- uCGUGUCGcuGGCcgacaccaaccugaCCACGGCGUcgGGUCCGc -3'
miRNA:   3'- -GCGCAGUu-CCG--------------GGUGCCGCA--CCGGGU- -5'
18711 3' -62.5 NC_004682.1 + 34688 0.68 0.26778
Target:  5'- gGCGU--GGGCCaccuCGGCGUGGCgUCGu -3'
miRNA:   3'- gCGCAguUCCGGgu--GCCGCACCG-GGU- -5'
18711 3' -62.5 NC_004682.1 + 3147 0.68 0.246848
Target:  5'- gGCGgcgCAgcagccgccaacucGGGCaCCACGGCG-GGCCa- -3'
miRNA:   3'- gCGCa--GU--------------UCCG-GGUGCCGCaCCGGgu -5'
18711 3' -62.5 NC_004682.1 + 12049 0.68 0.241981
Target:  5'- cCGCGUCGAacuugagcgcgauGGCCU-CGGCGaucuUGGUCCGc -3'
miRNA:   3'- -GCGCAGUU-------------CCGGGuGCCGC----ACCGGGU- -5'
18711 3' -62.5 NC_004682.1 + 46529 0.7 0.183371
Target:  5'- gCGCGUCAAGGCCCAggaggacaaGGUGcUGGaguCCGc -3'
miRNA:   3'- -GCGCAGUUCCGGGUg--------CCGC-ACCg--GGU- -5'
18711 3' -62.5 NC_004682.1 + 35188 0.7 0.169598
Target:  5'- uGCGUgGuGGCCgGCGGUGUGcGCCg- -3'
miRNA:   3'- gCGCAgUuCCGGgUGCCGCAC-CGGgu -5'
18711 3' -62.5 NC_004682.1 + 40262 0.72 0.130159
Target:  5'- uGCGUCGAGcGCUCGCaGCGUGaCCCu -3'
miRNA:   3'- gCGCAGUUC-CGGGUGcCGCACcGGGu -5'
18711 3' -62.5 NC_004682.1 + 10479 0.8 0.03299
Target:  5'- aCGCGUCAaguucucccaggaggAGGCCggugaCGCaGGCGUGGCCCAg -3'
miRNA:   3'- -GCGCAGU---------------UCCGG-----GUG-CCGCACCGGGU- -5'
18711 3' -62.5 NC_004682.1 + 25264 1.08 0.000218
Target:  5'- cCGCGUCAAGGCCCACGGCGUGGCCCAg -3'
miRNA:   3'- -GCGCAGUUCCGGGUGCCGCACCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.