Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18711 | 5' | -58.2 | NC_004682.1 | + | 2959 | 0.66 | 0.500989 |
Target: 5'- uGgGGCgCGGGCGGcggcgcUGGGCAGUGgAAc -3' miRNA: 3'- uCgCCGgGUCUGCC------ACUCGUCAUgUU- -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 38528 | 0.66 | 0.500989 |
Target: 5'- uGUGGCauCCcGACGGUGGGC-GUGCc- -3' miRNA: 3'- uCGCCG--GGuCUGCCACUCGuCAUGuu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 5478 | 0.66 | 0.460084 |
Target: 5'- cGCGGCCUgguacuGGACGGUcGAGCGcccggACAu -3' miRNA: 3'- uCGCCGGG------UCUGCCA-CUCGUca---UGUu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 48824 | 0.66 | 0.460084 |
Target: 5'- cGGCGaugacuuucGCCCAGGCGGUGA-C-GUACGu -3' miRNA: 3'- -UCGC---------CGGGUCUGCCACUcGuCAUGUu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 40991 | 0.67 | 0.411569 |
Target: 5'- cAGCGGCCUGGccagcuCGGUGccGUAGUGCu- -3' miRNA: 3'- -UCGCCGGGUCu-----GCCACu-CGUCAUGuu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 3251 | 0.68 | 0.35773 |
Target: 5'- cGGCGGCgCAGGCaacccacccGGUGgcGGCGGUGCc- -3' miRNA: 3'- -UCGCCGgGUCUG---------CCAC--UCGUCAUGuu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 22830 | 0.7 | 0.258129 |
Target: 5'- aAGCGGCCCGGAagaaGGUcccgGAGCccgcgcuGGUGCGc -3' miRNA: 3'- -UCGCCGGGUCUg---CCA----CUCG-------UCAUGUu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 10518 | 0.72 | 0.204247 |
Target: 5'- cGUGGCCCAGGuCGcGcuacGAGCAGUGCGc -3' miRNA: 3'- uCGCCGGGUCU-GC-Ca---CUCGUCAUGUu -5' |
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18711 | 5' | -58.2 | NC_004682.1 | + | 25300 | 1.06 | 0.000648 |
Target: 5'- gAGCGGCCCAGACGGUGAGCAGUACAAc -3' miRNA: 3'- -UCGCCGGGUCUGCCACUCGUCAUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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