miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18714 3' -57.7 NC_004682.1 + 42716 0.66 0.604959
Target:  5'- cGGGUCGCg--GCCUccagcgUCGGGAaCGGg- -3'
miRNA:   3'- -CCUAGCGgaaCGGG------AGCCCUaGCCac -5'
18714 3' -57.7 NC_004682.1 + 42157 0.66 0.587732
Target:  5'- uGGAUCGCUcgGCCCcgCGaGGccgcguccugcuccUCGGUGa -3'
miRNA:   3'- -CCUAGCGGaaCGGGa-GC-CCu-------------AGCCAC- -5'
18714 3' -57.7 NC_004682.1 + 44319 0.66 0.551471
Target:  5'- cGGGUCggaGUCUUGCaCCaUCGGGcugCGGUa -3'
miRNA:   3'- -CCUAG---CGGAACG-GG-AGCCCua-GCCAc -5'
18714 3' -57.7 NC_004682.1 + 30077 0.67 0.540929
Target:  5'- cGAcCGuCCUccgaCCUCGGGGUCGGUa -3'
miRNA:   3'- cCUaGC-GGAacg-GGAGCCCUAGCCAc -5'
18714 3' -57.7 NC_004682.1 + 14680 0.67 0.489367
Target:  5'- cGGcgCaGCCgUGCCCacCGGGG-CGGUGu -3'
miRNA:   3'- -CCuaG-CGGaACGGGa-GCCCUaGCCAC- -5'
18714 3' -57.7 NC_004682.1 + 41399 0.68 0.456623
Target:  5'- gGGAUCGCCUUGUcggcgucguuguagCCUCcGGuGAcgUGGUGc -3'
miRNA:   3'- -CCUAGCGGAACG--------------GGAG-CC-CUa-GCCAC- -5'
18714 3' -57.7 NC_004682.1 + 6988 0.68 0.445972
Target:  5'- uGAUCGCCagggccauugcgaUGCCCUCGGuGAgCGGa- -3'
miRNA:   3'- cCUAGCGGa------------ACGGGAGCC-CUaGCCac -5'
18714 3' -57.7 NC_004682.1 + 5608 0.68 0.440221
Target:  5'- cGGAUCGCCc-GCUggaaccgcgcaCUCGcGGUCGGUGa -3'
miRNA:   3'- -CCUAGCGGaaCGG-----------GAGCcCUAGCCAC- -5'
18714 3' -57.7 NC_004682.1 + 47932 0.69 0.394005
Target:  5'- cGAgcugCGCCUUGUCCggUGGGAUCaGGg- -3'
miRNA:   3'- cCUa---GCGGAACGGGa-GCCCUAG-CCac -5'
18714 3' -57.7 NC_004682.1 + 2328 0.7 0.367828
Target:  5'- -uGUCGCCcuucgGCCCUUGcGGGcCGGUGg -3'
miRNA:   3'- ccUAGCGGaa---CGGGAGC-CCUaGCCAC- -5'
18714 3' -57.7 NC_004682.1 + 19546 0.74 0.197382
Target:  5'- cGGUgGaUCUUGCCCUUgcgGGGGUCGGUGu -3'
miRNA:   3'- cCUAgC-GGAACGGGAG---CCCUAGCCAC- -5'
18714 3' -57.7 NC_004682.1 + 26695 1.1 0.000515
Target:  5'- aGGAUCGCCUUGCCCUCGGGAUCGGUGu -3'
miRNA:   3'- -CCUAGCGGAACGGGAGCCCUAGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.