miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18715 5' -57.4 NC_004682.1 + 49093 0.66 0.64347
Target:  5'- aGAAcugcCGACCCGAUGGCaggccgaaCGUGUucuggauGCCCg -3'
miRNA:   3'- aCUU----GCUGGGCUGCUG--------GCACAc------CGGG- -5'
18715 5' -57.4 NC_004682.1 + 33502 0.66 0.632722
Target:  5'- cGAACGcGCCCcaGGCGGCUcagGaGGCCCc -3'
miRNA:   3'- aCUUGC-UGGG--CUGCUGGca-CaCCGGG- -5'
18715 5' -57.4 NC_004682.1 + 40578 0.66 0.621974
Target:  5'- -uGACGACCgGGauGCCGgcgGcgaUGGCCCg -3'
miRNA:   3'- acUUGCUGGgCUgcUGGCa--C---ACCGGG- -5'
18715 5' -57.4 NC_004682.1 + 44723 0.66 0.621974
Target:  5'- cGGGCaugCCGACGccGCCG-GUGGCCa -3'
miRNA:   3'- aCUUGcugGGCUGC--UGGCaCACCGGg -5'
18715 5' -57.4 NC_004682.1 + 1828 0.66 0.621974
Target:  5'- cUGGGCguGACCCGACGAUCuUGccGGUCg -3'
miRNA:   3'- -ACUUG--CUGGGCUGCUGGcACa-CCGGg -5'
18715 5' -57.4 NC_004682.1 + 25101 0.66 0.621974
Target:  5'- -cAAUGACCgaGACGGaCGuUGUGGUCCa -3'
miRNA:   3'- acUUGCUGGg-CUGCUgGC-ACACCGGG- -5'
18715 5' -57.4 NC_004682.1 + 16431 0.66 0.611233
Target:  5'- -aGACGGCCaGuCGACCGUcGUugagggcgcGGCCCc -3'
miRNA:   3'- acUUGCUGGgCuGCUGGCA-CA---------CCGGG- -5'
18715 5' -57.4 NC_004682.1 + 4672 0.66 0.611233
Target:  5'- -uGACGACCgCGACGgcACCGacuacGUcGGCCUg -3'
miRNA:   3'- acUUGCUGG-GCUGC--UGGCa----CA-CCGGG- -5'
18715 5' -57.4 NC_004682.1 + 40694 0.66 0.600511
Target:  5'- cGGAUGAcCCCGGCGcgcuuGCCGUGcucGUCCc -3'
miRNA:   3'- aCUUGCU-GGGCUGC-----UGGCACac-CGGG- -5'
18715 5' -57.4 NC_004682.1 + 26469 0.66 0.590882
Target:  5'- cGAcguuCGACCCGGCGA-CGUGgaagcagauccaggaGGCCg -3'
miRNA:   3'- aCUu---GCUGGGCUGCUgGCACa--------------CCGGg -5'
18715 5' -57.4 NC_004682.1 + 23601 0.67 0.579151
Target:  5'- aGGACGACuucgCCGAUGucgcuUCGgcgGUGGCCa -3'
miRNA:   3'- aCUUGCUG----GGCUGCu----GGCa--CACCGGg -5'
18715 5' -57.4 NC_004682.1 + 15292 0.67 0.55585
Target:  5'- uUGGGCGGgCCGAUGugUGaUGgggggaggggaaGGCCCg -3'
miRNA:   3'- -ACUUGCUgGGCUGCugGC-ACa-----------CCGGG- -5'
18715 5' -57.4 NC_004682.1 + 12155 0.67 0.551642
Target:  5'- ----gGACCCGACG-CCGUGgucagguuggugucGGCCa -3'
miRNA:   3'- acuugCUGGGCUGCuGGCACa-------------CCGGg -5'
18715 5' -57.4 NC_004682.1 + 37624 0.67 0.547443
Target:  5'- aUGGACuACCCGACG-CC----GGCCCg -3'
miRNA:   3'- -ACUUGcUGGGCUGCuGGcacaCCGGG- -5'
18715 5' -57.4 NC_004682.1 + 42412 0.67 0.536991
Target:  5'- cUGGACGAcCCCGAaGugCGgagcUGGCUCu -3'
miRNA:   3'- -ACUUGCU-GGGCUgCugGCac--ACCGGG- -5'
18715 5' -57.4 NC_004682.1 + 22793 0.67 0.53595
Target:  5'- cUGAACGAacuggucgggaucUCCGACGAagagGUGgaagcGGCCCg -3'
miRNA:   3'- -ACUUGCU-------------GGGCUGCUgg--CACa----CCGGG- -5'
18715 5' -57.4 NC_004682.1 + 34415 0.68 0.516304
Target:  5'- aUGAGCGAcCCCGAUcaGACgCGgaUGcUGGCCg -3'
miRNA:   3'- -ACUUGCU-GGGCUG--CUG-GC--AC-ACCGGg -5'
18715 5' -57.4 NC_004682.1 + 1894 0.68 0.516304
Target:  5'- cGAGgGACUccacauCGACGGCCaG-GUGGCCg -3'
miRNA:   3'- aCUUgCUGG------GCUGCUGG-CaCACCGGg -5'
18715 5' -57.4 NC_004682.1 + 47142 0.68 0.50608
Target:  5'- cGGAUGAUggcuUCGGCGAuggcuCCGaUGUGGCCUc -3'
miRNA:   3'- aCUUGCUG----GGCUGCU-----GGC-ACACCGGG- -5'
18715 5' -57.4 NC_004682.1 + 13589 0.68 0.485901
Target:  5'- cGu-CGugCCGACGuACCGgacUGGCCUu -3'
miRNA:   3'- aCuuGCugGGCUGC-UGGCac-ACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.