Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18717 | 3' | -54.1 | NC_004682.1 | + | 24509 | 0.66 | 0.786188 |
Target: 5'- gCAUCagccaGGUcGgcgCGGACUaccGGGGCUGGg -3' miRNA: 3'- -GUAGg----CCAuCa--GCUUGAc--UCCCGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 39197 | 0.66 | 0.786188 |
Target: 5'- uGUCCaGGUAGUCGA--UGAaccGCUGGa -3' miRNA: 3'- gUAGG-CCAUCAGCUugACUcc-CGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 41818 | 0.66 | 0.786188 |
Target: 5'- --cCCGGUcgcuGUCGAucCUGAccGGCUGGa -3' miRNA: 3'- guaGGCCAu---CAGCUu-GACUc-CCGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 35476 | 0.67 | 0.713281 |
Target: 5'- --gCCGGUGccuucGUCaucgaGGACUcccgcGAGGGCUGGg -3' miRNA: 3'- guaGGCCAU-----CAG-----CUUGA-----CUCCCGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 3166 | 0.68 | 0.680584 |
Target: 5'- gGUCgCGGUGGUgGggUagccGGGCUGGc -3' miRNA: 3'- gUAG-GCCAUCAgCuuGacu-CCCGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 8220 | 0.68 | 0.679485 |
Target: 5'- gAUCCGGUcacccuuGGUgagGGGCUGAaucgugcuGGGCUGGc -3' miRNA: 3'- gUAGGCCA-------UCAg--CUUGACU--------CCCGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 26263 | 0.69 | 0.581106 |
Target: 5'- -uUCCGGUGGgUGAACUGcuGGGCa-- -3' miRNA: 3'- guAGGCCAUCaGCUUGACu-CCCGacc -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 29078 | 0.7 | 0.505714 |
Target: 5'- gGUCCaGUGGcagggggaGGACUGGGGGCUGc -3' miRNA: 3'- gUAGGcCAUCag------CUUGACUCCCGACc -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 31812 | 0.7 | 0.502569 |
Target: 5'- uCAUCUGGgcuuccUCGGACUGGacacggagacgaccGGGCUGGa -3' miRNA: 3'- -GUAGGCCauc---AGCUUGACU--------------CCCGACC- -5' |
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18717 | 3' | -54.1 | NC_004682.1 | + | 28967 | 1.1 | 0.001114 |
Target: 5'- cCAUCCGGUAGUCGAACUGAGGGCUGGu -3' miRNA: 3'- -GUAGGCCAUCAGCUUGACUCCCGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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