miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18717 5' -62 NC_004682.1 + 7074 0.65 0.381215
Target:  5'- gCCCCG--UCUCCCCCgcaugugaucggGCCuACgUGGGCa -3'
miRNA:   3'- -GGGGUcaGGAGGGGGa-----------CGG-UG-ACCUG- -5'
18717 5' -62 NC_004682.1 + 16400 0.66 0.374413
Target:  5'- gCCCCAGUCCUUCaugCC-GUCGC-GGAg -3'
miRNA:   3'- -GGGGUCAGGAGGg--GGaCGGUGaCCUg -5'
18717 5' -62 NC_004682.1 + 85 0.66 0.366025
Target:  5'- gCUCAGagCCgCCCUCgcggGCgACUGGACa -3'
miRNA:   3'- gGGGUCa-GGaGGGGGa---CGgUGACCUG- -5'
18717 5' -62 NC_004682.1 + 50816 0.66 0.366025
Target:  5'- aCCCCAGggggguaugcCCUCCCCC-GCCccuuCUcGACc -3'
miRNA:   3'- -GGGGUCa---------GGAGGGGGaCGGu---GAcCUG- -5'
18717 5' -62 NC_004682.1 + 38364 0.66 0.357769
Target:  5'- gCCCCGGcUCgUCCCCgU-CCGCgaGGAUg -3'
miRNA:   3'- -GGGGUC-AGgAGGGGgAcGGUGa-CCUG- -5'
18717 5' -62 NC_004682.1 + 29689 0.66 0.330684
Target:  5'- cUCCCGGUCCUucuugucgaucucgCCCugcagcuCCUGCUGCUuccGGGCg -3'
miRNA:   3'- -GGGGUCAGGA--------------GGG-------GGACGGUGA---CCUG- -5'
18717 5' -62 NC_004682.1 + 7864 0.69 0.222592
Target:  5'- gUCCCAGUCCUUCUCg-GCCACggugucguugccggGGAUg -3'
miRNA:   3'- -GGGGUCAGGAGGGGgaCGGUGa-------------CCUG- -5'
18717 5' -62 NC_004682.1 + 50611 0.69 0.219788
Target:  5'- cCCCCGGUagcggguaccccaCCUggcaCCCCCUGCC-CUGuaGGCa -3'
miRNA:   3'- -GGGGUCA-------------GGA----GGGGGACGGuGAC--CUG- -5'
18717 5' -62 NC_004682.1 + 9598 0.74 0.097964
Target:  5'- gCCCAGcUCCUCgCCCUugacgccgaacagcaGCCGCUGGGg -3'
miRNA:   3'- gGGGUC-AGGAGgGGGA---------------CGGUGACCUg -5'
18717 5' -62 NC_004682.1 + 29001 1.09 0.000191
Target:  5'- cCCCCAGUCCUCCCCCUGCCACUGGACc -3'
miRNA:   3'- -GGGGUCAGGAGGGGGACGGUGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.