miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18719 3' -55.3 NC_004682.1 + 10713 0.66 0.753883
Target:  5'- aCCAGGcacaGGUCUC-UCgAcCAGugGCCa -3'
miRNA:   3'- -GGUCCc---CUAGAGcAGgUaGUCugCGG- -5'
18719 3' -55.3 NC_004682.1 + 34505 0.66 0.743593
Target:  5'- cCCAcGGGGAccaUCG-CCA--AGAUGCCg -3'
miRNA:   3'- -GGU-CCCCUag-AGCaGGUagUCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 8081 0.66 0.733192
Target:  5'- uCCAGGaucgacaucaGGAUCUCGUCgAcCGG-CaGCCa -3'
miRNA:   3'- -GGUCC----------CCUAGAGCAGgUaGUCuG-CGG- -5'
18719 3' -55.3 NC_004682.1 + 2591 0.66 0.722691
Target:  5'- uUCAGGGGccacaggGUCCAgCAGGCGUCc -3'
miRNA:   3'- -GGUCCCCuagag--CAGGUaGUCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 38755 0.66 0.712103
Target:  5'- uCCGGGGGuucCUCG-CCAUCccguaccuGCGCUg -3'
miRNA:   3'- -GGUCCCCua-GAGCaGGUAGuc------UGCGG- -5'
18719 3' -55.3 NC_004682.1 + 46362 0.66 0.701437
Target:  5'- gCCAGaGGGAUggccgcaaCgccgCGUUCGcUCGGGCGCUg -3'
miRNA:   3'- -GGUC-CCCUA--------Ga---GCAGGU-AGUCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 8805 0.67 0.667999
Target:  5'- gCAGGGGG-CUCGUCacuugauCAUCAc-CGCCc -3'
miRNA:   3'- gGUCCCCUaGAGCAG-------GUAGUcuGCGG- -5'
18719 3' -55.3 NC_004682.1 + 20439 0.67 0.651686
Target:  5'- cCCuGGGGG-CUCGaaugagccacggcaCCAUCAcGACGCUg -3'
miRNA:   3'- -GGuCCCCUaGAGCa-------------GGUAGU-CUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 37221 0.68 0.592864
Target:  5'- aCCGgcuGGGGAUCUCGUCgCAcacguUCGGcuACGgCg -3'
miRNA:   3'- -GGU---CCCCUAGAGCAG-GU-----AGUC--UGCgG- -5'
18719 3' -55.3 NC_004682.1 + 35703 0.68 0.586362
Target:  5'- aCCGGGgaGGAUCUUGaacuccUCCAUCAGccggaucagaucggcGCGCUc -3'
miRNA:   3'- -GGUCC--CCUAGAGC------AGGUAGUC---------------UGCGG- -5'
18719 3' -55.3 NC_004682.1 + 10215 0.68 0.582034
Target:  5'- aCAGGcGGugAUCUCGUCCG-CGcuCGCCa -3'
miRNA:   3'- gGUCC-CC--UAGAGCAGGUaGUcuGCGG- -5'
18719 3' -55.3 NC_004682.1 + 32139 0.69 0.549819
Target:  5'- gCCuGGGuGAagccagCUCGcUUCAUCAGGCGCa -3'
miRNA:   3'- -GGuCCC-CUa-----GAGC-AGGUAGUCUGCGg -5'
18719 3' -55.3 NC_004682.1 + 12967 0.69 0.539199
Target:  5'- cCCAacGGGAUgUCa--CGUCGGACGCCg -3'
miRNA:   3'- -GGUc-CCCUAgAGcagGUAGUCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 42289 0.69 0.539199
Target:  5'- cUCAGGGGAaCUCaGcUCAUgCAGGCGCUc -3'
miRNA:   3'- -GGUCCCCUaGAG-CaGGUA-GUCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 27309 0.69 0.518177
Target:  5'- gCCAGGGuAUCg-GUCguUCAGGgGCCg -3'
miRNA:   3'- -GGUCCCcUAGagCAGguAGUCUgCGG- -5'
18719 3' -55.3 NC_004682.1 + 40903 0.7 0.507788
Target:  5'- uCCAGcacgaaGGGAUCguggUCGUCCA-CGGugGCg -3'
miRNA:   3'- -GGUC------CCCUAG----AGCAGGUaGUCugCGg -5'
18719 3' -55.3 NC_004682.1 + 18046 0.7 0.487283
Target:  5'- -gGGGGcGAUCUCGUCacuCAUCGGA-GUCa -3'
miRNA:   3'- ggUCCC-CUAGAGCAG---GUAGUCUgCGG- -5'
18719 3' -55.3 NC_004682.1 + 43438 0.7 0.486268
Target:  5'- gCGGGGGcucgaugccguagGUCUCGgCCAgggcaacgcugUAGACGCCa -3'
miRNA:   3'- gGUCCCC-------------UAGAGCaGGUa----------GUCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 35426 0.7 0.477178
Target:  5'- cCCAGucGGGGUCguacUCCGUCgacaGGACGCCu -3'
miRNA:   3'- -GGUC--CCCUAGagc-AGGUAG----UCUGCGG- -5'
18719 3' -55.3 NC_004682.1 + 5362 0.71 0.457286
Target:  5'- uCCAGGGGAcCguuggCGuacUCC-UCGGugGCCc -3'
miRNA:   3'- -GGUCCCCUaGa----GC---AGGuAGUCugCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.