miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18720 3' -57.2 NC_004682.1 + 50660 0.66 0.575991
Target:  5'- gGGUGCaGG-CAGggGUUAGgGCagGUAg -3'
miRNA:   3'- -UCACGcCCaGUCuuCAGUCgCGg-CAU- -5'
18720 3' -57.2 NC_004682.1 + 41775 0.66 0.565076
Target:  5'- gGGUGaaCGcGUCGG-AGUCAGCGCUGa- -3'
miRNA:   3'- -UCAC--GCcCAGUCuUCAGUCGCGGCau -5'
18720 3' -57.2 NC_004682.1 + 29228 0.66 0.543416
Target:  5'- -cUGCGGGUCA--GGUCuGCgagacaGCCGUGg -3'
miRNA:   3'- ucACGCCCAGUcuUCAGuCG------CGGCAU- -5'
18720 3' -57.2 NC_004682.1 + 6280 0.66 0.53055
Target:  5'- gGGUGCGGcGUUcguacucgcgcuGAAcGUCAGCGUCGUc -3'
miRNA:   3'- -UCACGCC-CAGu-----------CUU-CAGUCGCGGCAu -5'
18720 3' -57.2 NC_004682.1 + 14948 0.67 0.490606
Target:  5'- cAG-GCGuGGUCgAGgcGUUcGCGCCGUAg -3'
miRNA:   3'- -UCaCGC-CCAG-UCuuCAGuCGCGGCAU- -5'
18720 3' -57.2 NC_004682.1 + 35191 0.69 0.366353
Target:  5'- cAGUGCGuGGUggcCGGcGGUguGCGCCGg- -3'
miRNA:   3'- -UCACGC-CCA---GUCuUCAguCGCGGCau -5'
18720 3' -57.2 NC_004682.1 + 30588 0.69 0.35773
Target:  5'- cGUGCGGucaUCAGGuggaGGUCcGCGCCGUc -3'
miRNA:   3'- uCACGCCc--AGUCU----UCAGuCGCGGCAu -5'
18720 3' -57.2 NC_004682.1 + 5156 0.73 0.215438
Target:  5'- cGGUGCGGGUgCGGGAGcagccggugCGGCGUCGg- -3'
miRNA:   3'- -UCACGCCCA-GUCUUCa--------GUCGCGGCau -5'
18720 3' -57.2 NC_004682.1 + 6389 0.73 0.198842
Target:  5'- --aGCGGGUCGGccuGUcCGGUGCCGUGg -3'
miRNA:   3'- ucaCGCCCAGUCuu-CA-GUCGCGGCAU- -5'
18720 3' -57.2 NC_004682.1 + 21268 0.77 0.105071
Target:  5'- gGGUGCGGGUCuucgccguGGAGG-UAGCGCCGa- -3'
miRNA:   3'- -UCACGCCCAG--------UCUUCaGUCGCGGCau -5'
18720 3' -57.2 NC_004682.1 + 30038 1.07 0.000731
Target:  5'- aAGUGCGGGUCAGAAGUCAGCGCCGUAg -3'
miRNA:   3'- -UCACGCCCAGUCUUCAGUCGCGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.