miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18720 5' -60.4 NC_004682.1 + 30072 1.11 0.000323
Target:  5'- cCCCACGACCGUCCUCCGACCUCGGGGu -3'
miRNA:   3'- -GGGUGCUGGCAGGAGGCUGGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 2090 0.79 0.06703
Target:  5'- aCCCugGACgGgugcgCCgUCGGCCUCGGGGg -3'
miRNA:   3'- -GGGugCUGgCa----GGaGGCUGGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 2771 0.77 0.097928
Target:  5'- cCCCACGAUcacguagaaCGUCgUCgCGACCuUCGGGGa -3'
miRNA:   3'- -GGGUGCUG---------GCAGgAG-GCUGG-AGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 43020 0.74 0.159167
Target:  5'- aCCACGAcaucucaaggcaagaCCGUCCU-CGACUucaUCGGGGg -3'
miRNA:   3'- gGGUGCU---------------GGCAGGAgGCUGG---AGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 36950 0.73 0.188535
Target:  5'- gUCCGuCGACCGUgaaCCGGCCUCGGuGGa -3'
miRNA:   3'- -GGGU-GCUGGCAggaGGCUGGAGCC-CC- -5'
18720 5' -60.4 NC_004682.1 + 37492 0.72 0.219268
Target:  5'- aUCCACGAaggcaaccaCGaCCUgCGGCCUCGGGa -3'
miRNA:   3'- -GGGUGCUg--------GCaGGAgGCUGGAGCCCc -5'
18720 5' -60.4 NC_004682.1 + 19865 0.7 0.279904
Target:  5'- gUCCGgGACCGUCCa--GAUCgucgCGGGGg -3'
miRNA:   3'- -GGGUgCUGGCAGGaggCUGGa---GCCCC- -5'
18720 5' -60.4 NC_004682.1 + 25767 0.7 0.279904
Target:  5'- cCCCugGugUGaaCagUCgGACCUCGGGGu -3'
miRNA:   3'- -GGGugCugGCagG--AGgCUGGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 43410 0.69 0.322304
Target:  5'- uUCC-CGGCCauguaguaGUCC-CCGAUCUgCGGGGg -3'
miRNA:   3'- -GGGuGCUGG--------CAGGaGGCUGGA-GCCCC- -5'
18720 5' -60.4 NC_004682.1 + 35393 0.69 0.327552
Target:  5'- cCUCGCGGgaGUCCUcgaugacgaaggcaCCGGCCcagUCGGGGu -3'
miRNA:   3'- -GGGUGCUggCAGGA--------------GGCUGG---AGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 32161 0.69 0.353139
Target:  5'- cCCCGCaACCGUgUCUCgGAUCgucCGGGGc -3'
miRNA:   3'- -GGGUGcUGGCA-GGAGgCUGGa--GCCCC- -5'
18720 5' -60.4 NC_004682.1 + 48933 0.69 0.356335
Target:  5'- gCCGCGACCaUCuCUCCGAgcaugaugaucauguCUUCGcGGGa -3'
miRNA:   3'- gGGUGCUGGcAG-GAGGCU---------------GGAGC-CCC- -5'
18720 5' -60.4 NC_004682.1 + 14127 0.68 0.369321
Target:  5'- cCCCGCGuccaggccgUCGUCCUcCCGAuCCUCcGGGc -3'
miRNA:   3'- -GGGUGCu--------GGCAGGA-GGCU-GGAGcCCC- -5'
18720 5' -60.4 NC_004682.1 + 13514 0.68 0.403176
Target:  5'- gUCugGguguuGCCGUCCUCgucggugaCGACCucuUCGGGGu -3'
miRNA:   3'- gGGugC-----UGGCAGGAG--------GCUGG---AGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 23648 0.68 0.403176
Target:  5'- aCCC-UGACCGacgggCCUgCGGCCcuccugCGGGGc -3'
miRNA:   3'- -GGGuGCUGGCa----GGAgGCUGGa-----GCCCC- -5'
18720 5' -60.4 NC_004682.1 + 9378 0.67 0.419931
Target:  5'- aCCCACuGGCCGUCCUCgcgguuccagaUGACCguguuguUCGGcaGGu -3'
miRNA:   3'- -GGGUG-CUGGCAGGAG-----------GCUGG-------AGCC--CC- -5'
18720 5' -60.4 NC_004682.1 + 47203 0.67 0.420824
Target:  5'- aCUCACGGuuGgcugCCUgcaugaacUCGaACCUCGGGGu -3'
miRNA:   3'- -GGGUGCUggCa---GGA--------GGC-UGGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 49959 0.67 0.424409
Target:  5'- gCCUGUGGCCGUCCcgaugagcaugcugcUCCGGuugacaacCCUUGGGGc -3'
miRNA:   3'- -GGGUGCUGGCAGG---------------AGGCU--------GGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 26097 0.67 0.466902
Target:  5'- gCCUACGGCgggaGUCCgacgCCGGCCUCa--- -3'
miRNA:   3'- -GGGUGCUGg---CAGGa---GGCUGGAGcccc -5'
18720 5' -60.4 NC_004682.1 + 15670 0.66 0.476429
Target:  5'- aCgGCGACUG-CCUagucgCUGACCUCuGGGa -3'
miRNA:   3'- gGgUGCUGGCaGGA-----GGCUGGAGcCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.