Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18720 | 5' | -60.4 | NC_004682.1 | + | 25767 | 0.7 | 0.279904 |
Target: 5'- cCCCugGugUGaaCagUCgGACCUCGGGGu -3' miRNA: 3'- -GGGugCugGCagG--AGgCUGGAGCCCC- -5' |
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18720 | 5' | -60.4 | NC_004682.1 | + | 37492 | 0.72 | 0.219268 |
Target: 5'- aUCCACGAaggcaaccaCGaCCUgCGGCCUCGGGa -3' miRNA: 3'- -GGGUGCUg--------GCaGGAgGCUGGAGCCCc -5' |
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18720 | 5' | -60.4 | NC_004682.1 | + | 36950 | 0.73 | 0.188535 |
Target: 5'- gUCCGuCGACCGUgaaCCGGCCUCGGuGGa -3' miRNA: 3'- -GGGU-GCUGGCAggaGGCUGGAGCC-CC- -5' |
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18720 | 5' | -60.4 | NC_004682.1 | + | 43020 | 0.74 | 0.159167 |
Target: 5'- aCCACGAcaucucaaggcaagaCCGUCCU-CGACUucaUCGGGGg -3' miRNA: 3'- gGGUGCU---------------GGCAGGAgGCUGG---AGCCCC- -5' |
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18720 | 5' | -60.4 | NC_004682.1 | + | 2771 | 0.77 | 0.097928 |
Target: 5'- cCCCACGAUcacguagaaCGUCgUCgCGACCuUCGGGGa -3' miRNA: 3'- -GGGUGCUG---------GCAGgAG-GCUGG-AGCCCC- -5' |
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18720 | 5' | -60.4 | NC_004682.1 | + | 2090 | 0.79 | 0.06703 |
Target: 5'- aCCCugGACgGgugcgCCgUCGGCCUCGGGGg -3' miRNA: 3'- -GGGugCUGgCa----GGaGGCUGGAGCCCC- -5' |
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18720 | 5' | -60.4 | NC_004682.1 | + | 30072 | 1.11 | 0.000323 |
Target: 5'- cCCCACGACCGUCCUCCGACCUCGGGGu -3' miRNA: 3'- -GGGUGCUGGCAGGAGGCUGGAGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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