miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18720 5' -60.4 NC_004682.1 + 25767 0.7 0.279904
Target:  5'- cCCCugGugUGaaCagUCgGACCUCGGGGu -3'
miRNA:   3'- -GGGugCugGCagG--AGgCUGGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 37492 0.72 0.219268
Target:  5'- aUCCACGAaggcaaccaCGaCCUgCGGCCUCGGGa -3'
miRNA:   3'- -GGGUGCUg--------GCaGGAgGCUGGAGCCCc -5'
18720 5' -60.4 NC_004682.1 + 36950 0.73 0.188535
Target:  5'- gUCCGuCGACCGUgaaCCGGCCUCGGuGGa -3'
miRNA:   3'- -GGGU-GCUGGCAggaGGCUGGAGCC-CC- -5'
18720 5' -60.4 NC_004682.1 + 43020 0.74 0.159167
Target:  5'- aCCACGAcaucucaaggcaagaCCGUCCU-CGACUucaUCGGGGg -3'
miRNA:   3'- gGGUGCU---------------GGCAGGAgGCUGG---AGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 2771 0.77 0.097928
Target:  5'- cCCCACGAUcacguagaaCGUCgUCgCGACCuUCGGGGa -3'
miRNA:   3'- -GGGUGCUG---------GCAGgAG-GCUGG-AGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 2090 0.79 0.06703
Target:  5'- aCCCugGACgGgugcgCCgUCGGCCUCGGGGg -3'
miRNA:   3'- -GGGugCUGgCa----GGaGGCUGGAGCCCC- -5'
18720 5' -60.4 NC_004682.1 + 30072 1.11 0.000323
Target:  5'- cCCCACGACCGUCCUCCGACCUCGGGGu -3'
miRNA:   3'- -GGGUGCUGGCAGGAGGCUGGAGCCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.