miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18721 3' -59.8 NC_004682.1 + 34443 0.66 0.460673
Target:  5'- uGGUCCccGUGGGugccACCGuccucuucuucaCCGGCACCGGg -3'
miRNA:   3'- uCUAGGa-CGCUC----UGGC------------GGCCGUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 1253 0.66 0.460673
Target:  5'- cAGAUCUUcCGAGAUCgGCUGGC-UCAGg -3'
miRNA:   3'- -UCUAGGAcGCUCUGG-CGGCCGuGGUC- -5'
18721 3' -59.8 NC_004682.1 + 13462 0.66 0.431929
Target:  5'- -cGUCCUcguagGCGGGACCGCCaucgagaaGGCucauCCGGc -3'
miRNA:   3'- ucUAGGA-----CGCUCUGGCGG--------CCGu---GGUC- -5'
18721 3' -59.8 NC_004682.1 + 11873 0.66 0.431929
Target:  5'- cGGUCCa-CGAcGCCGagaCGGCACCGGu -3'
miRNA:   3'- uCUAGGacGCUcUGGCg--GCCGUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 2156 0.66 0.422582
Target:  5'- uGGAcCCUGCG-GACCcugcggGCCGGUcggacccugcggACCAGu -3'
miRNA:   3'- -UCUaGGACGCuCUGG------CGGCCG------------UGGUC- -5'
18721 3' -59.8 NC_004682.1 + 40217 0.67 0.413358
Target:  5'- cGAUCCUGCucGAuGCUGCCGcaggcaaggaGCACCAc -3'
miRNA:   3'- uCUAGGACG--CUcUGGCGGC----------CGUGGUc -5'
18721 3' -59.8 NC_004682.1 + 23973 0.67 0.413358
Target:  5'- -cGUCCUGgGGGugUgGCCGGUGCCc- -3'
miRNA:   3'- ucUAGGACgCUCugG-CGGCCGUGGuc -5'
18721 3' -59.8 NC_004682.1 + 5037 0.67 0.413358
Target:  5'- cGAUCC----AGACCGcCCGaGCACCGGg -3'
miRNA:   3'- uCUAGGacgcUCUGGC-GGC-CGUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 41514 0.67 0.386447
Target:  5'- gAGcgCCUGCGuGGuCgGCCuGCACCAc -3'
miRNA:   3'- -UCuaGGACGCuCU-GgCGGcCGUGGUc -5'
18721 3' -59.8 NC_004682.1 + 18612 0.67 0.386447
Target:  5'- cAGAUCCUGCGAGGuguCCGCgagcgaGGcCAUCuGg -3'
miRNA:   3'- -UCUAGGACGCUCU---GGCGg-----CC-GUGGuC- -5'
18721 3' -59.8 NC_004682.1 + 2300 0.67 0.386447
Target:  5'- gGGA-CCUGCuGGGCCGgUGGguCCGGu -3'
miRNA:   3'- -UCUaGGACGcUCUGGCgGCCguGGUC- -5'
18721 3' -59.8 NC_004682.1 + 5613 0.67 0.38557
Target:  5'- uGAUCCgucGCGAGACCGUcucgaugucgcggCGGuCGCaCAGc -3'
miRNA:   3'- uCUAGGa--CGCUCUGGCG-------------GCC-GUG-GUC- -5'
18721 3' -59.8 NC_004682.1 + 34675 0.68 0.360717
Target:  5'- cGGGUCUgccacagGCGAGAacgUCGCCcGCAUCAGg -3'
miRNA:   3'- -UCUAGGa------CGCUCU---GGCGGcCGUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 122 0.68 0.336206
Target:  5'- gGGGUaauggGCucGACCGCCGGCACgGGc -3'
miRNA:   3'- -UCUAgga--CGcuCUGGCGGCCGUGgUC- -5'
18721 3' -59.8 NC_004682.1 + 18032 0.68 0.336206
Target:  5'- gAGA-CgaGCGgcaGGAUCGCCGGCAUCAu -3'
miRNA:   3'- -UCUaGgaCGC---UCUGGCGGCCGUGGUc -5'
18721 3' -59.8 NC_004682.1 + 35269 0.69 0.276212
Target:  5'- gAGAUCCUgaGCGAGAUCGCuaCGGaggguggacagcuCACCGGu -3'
miRNA:   3'- -UCUAGGA--CGCUCUGGCG--GCC-------------GUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 11754 0.7 0.263439
Target:  5'- aAGGUCCcGaUGGGuCCGaCCGGCAUCAGc -3'
miRNA:   3'- -UCUAGGaC-GCUCuGGC-GGCCGUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 538 0.7 0.238121
Target:  5'- cGGcCCUG-GAGGCCGCUGGaUACCGGc -3'
miRNA:   3'- uCUaGGACgCUCUGGCGGCC-GUGGUC- -5'
18721 3' -59.8 NC_004682.1 + 26443 0.73 0.148326
Target:  5'- cAGAUCCaG-GAGGCCGCUGcGCGCCGa -3'
miRNA:   3'- -UCUAGGaCgCUCUGGCGGC-CGUGGUc -5'
18721 3' -59.8 NC_004682.1 + 25201 0.76 0.103917
Target:  5'- -cGUCCaagcugGCGAGGCUGUCGGCACCGu -3'
miRNA:   3'- ucUAGGa-----CGCUCUGGCGGCCGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.