miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18725 3' -49.4 NC_004682.1 + 38992 0.66 0.944757
Target:  5'- uCAAGggCAGCgcgGugGCGAucaUCAaGGAACa -3'
miRNA:   3'- -GUUCa-GUCG---CugCGCUua-AGU-CCUUG- -5'
18725 3' -49.4 NC_004682.1 + 30224 0.66 0.944757
Target:  5'- aCAAGgcgCAGUGGgGCGc--UCAGGAGa -3'
miRNA:   3'- -GUUCa--GUCGCUgCGCuuaAGUCCUUg -5'
18725 3' -49.4 NC_004682.1 + 15698 0.66 0.944757
Target:  5'- gGAGaCGuaCGGCGUGGAUcUCAGGGACa -3'
miRNA:   3'- gUUCaGUc-GCUGCGCUUA-AGUCCUUG- -5'
18725 3' -49.4 NC_004682.1 + 6248 0.66 0.944757
Target:  5'- gAGGUCAGUGACGcCGAccUCcGGGc- -3'
miRNA:   3'- gUUCAGUCGCUGC-GCUuaAGuCCUug -5'
18725 3' -49.4 NC_004682.1 + 25246 0.66 0.933503
Target:  5'- uGAGUgCGGCGAUgacguugGCGAccuGUUCGGuGGACa -3'
miRNA:   3'- gUUCA-GUCGCUG-------CGCU---UAAGUC-CUUG- -5'
18725 3' -49.4 NC_004682.1 + 5161 0.67 0.915744
Target:  5'- gGGGUCGGU---GCGggUgCGGGAGCa -3'
miRNA:   3'- gUUCAGUCGcugCGCuuAaGUCCUUG- -5'
18725 3' -49.4 NC_004682.1 + 24953 0.67 0.915744
Target:  5'- gGAGUCAGUGccaauCGCGAA--CGGGAc- -3'
miRNA:   3'- gUUCAGUCGCu----GCGCUUaaGUCCUug -5'
18725 3' -49.4 NC_004682.1 + 5505 0.67 0.902003
Target:  5'- -cGGcCAGCGcACGCGggUUCuugacGAACa -3'
miRNA:   3'- guUCaGUCGC-UGCGCuuAAGuc---CUUG- -5'
18725 3' -49.4 NC_004682.1 + 48605 0.68 0.887068
Target:  5'- cCGGG-CAccGCGugGCG--UUCGGGAACu -3'
miRNA:   3'- -GUUCaGU--CGCugCGCuuAAGUCCUUG- -5'
18725 3' -49.4 NC_004682.1 + 22669 0.68 0.887067
Target:  5'- uGAGUCAGUuGC-CGAAcgUCAGGAAg -3'
miRNA:   3'- gUUCAGUCGcUGcGCUUa-AGUCCUUg -5'
18725 3' -49.4 NC_004682.1 + 49072 0.68 0.88629
Target:  5'- --cGUCAGCGACGUGcugcUCcacaacuGGGAGCu -3'
miRNA:   3'- guuCAGUCGCUGCGCuua-AG-------UCCUUG- -5'
18725 3' -49.4 NC_004682.1 + 9811 0.71 0.732165
Target:  5'- aCAAGaucuUCGGCGGCGCGu----GGGAGCa -3'
miRNA:   3'- -GUUC----AGUCGCUGCGCuuaagUCCUUG- -5'
18725 3' -49.4 NC_004682.1 + 3224 0.73 0.606048
Target:  5'- --cGUCGGCGGCGCGGca-CAGGGcgACa -3'
miRNA:   3'- guuCAGUCGCUGCGCUuaaGUCCU--UG- -5'
18725 3' -49.4 NC_004682.1 + 37580 0.74 0.582986
Target:  5'- gGAGUUcGCGAaGCGGAUgCGGGAGCa -3'
miRNA:   3'- gUUCAGuCGCUgCGCUUAaGUCCUUG- -5'
18725 3' -49.4 NC_004682.1 + 33266 1.1 0.003103
Target:  5'- uCAAGUCAGCGACGCGAAUUCAGGAACu -3'
miRNA:   3'- -GUUCAGUCGCUGCGCUUAAGUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.