miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18725 5' -55.1 NC_004682.1 + 7925 0.66 0.748748
Target:  5'- cCAgggCGUCGUagagcaugCCGGUgucgaccgccuUGCCCGACa -3'
miRNA:   3'- uGUaa-GCAGCAa-------GGCCA-----------GCGGGCUGa -5'
18725 5' -55.1 NC_004682.1 + 40047 0.66 0.717201
Target:  5'- -aGUUCGUUcgccggGUUCCGGuUCGUCCGuGCg -3'
miRNA:   3'- ugUAAGCAG------CAAGGCC-AGCGGGC-UGa -5'
18725 5' -55.1 NC_004682.1 + 19912 0.66 0.695733
Target:  5'- gGCAUUCGgauGcgCCGGuUCGCCUGgGCUg -3'
miRNA:   3'- -UGUAAGCag-CaaGGCC-AGCGGGC-UGA- -5'
18725 5' -55.1 NC_004682.1 + 32981 0.67 0.64118
Target:  5'- gGCAccUGUCGUUCuCGGUCGUCUcGCa -3'
miRNA:   3'- -UGUaaGCAGCAAG-GCCAGCGGGcUGa -5'
18725 5' -55.1 NC_004682.1 + 10991 0.68 0.619228
Target:  5'- ---gUUGUUGgUCCGGgccUUGCCCGACUc -3'
miRNA:   3'- uguaAGCAGCaAGGCC---AGCGGGCUGA- -5'
18725 5' -55.1 NC_004682.1 + 5575 0.68 0.597322
Target:  5'- cACAgcgCGUUGaugUCCGGgCGCUCGACc -3'
miRNA:   3'- -UGUaa-GCAGCa--AGGCCaGCGGGCUGa -5'
18725 5' -55.1 NC_004682.1 + 47498 0.68 0.597322
Target:  5'- cCGUUCGagggCGcUCCGGUCGUCUGcCUg -3'
miRNA:   3'- uGUAAGCa---GCaAGGCCAGCGGGCuGA- -5'
18725 5' -55.1 NC_004682.1 + 15071 0.68 0.586408
Target:  5'- ----gCGUCGUcCCGG-CGCaCCGACg -3'
miRNA:   3'- uguaaGCAGCAaGGCCaGCG-GGCUGa -5'
18725 5' -55.1 NC_004682.1 + 28413 0.7 0.490814
Target:  5'- cGCAggagcgcCGUUGUaUCCGGUCGCUCgGACUc -3'
miRNA:   3'- -UGUaa-----GCAGCA-AGGCCAGCGGG-CUGA- -5'
18725 5' -55.1 NC_004682.1 + 30633 0.77 0.180107
Target:  5'- ---aUCaUCG-UCCGGUCGCCCGACa -3'
miRNA:   3'- uguaAGcAGCaAGGCCAGCGGGCUGa -5'
18725 5' -55.1 NC_004682.1 + 33300 1.08 0.00132
Target:  5'- cACAUUCGUCGUUCCGGUCGCCCGACUg -3'
miRNA:   3'- -UGUAAGCAGCAAGGCCAGCGGGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.