miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18727 5' -55.7 NC_004682.1 + 20143 0.66 0.678701
Target:  5'- aAGCGGUCuCGUcGCUGACCgacagcgaUGGCGa -3'
miRNA:   3'- cUCGCUGGuGCAaCGACUGGa-------ACCGC- -5'
18727 5' -55.7 NC_004682.1 + 20044 0.66 0.656622
Target:  5'- -cGCGGCaguCGCGUUGCgGGCgaUGGCc -3'
miRNA:   3'- cuCGCUG---GUGCAACGaCUGgaACCGc -5'
18727 5' -55.7 NC_004682.1 + 6216 0.66 0.623357
Target:  5'- cAGCGGCCcgcCGUcGUacGCCUUGGCGu -3'
miRNA:   3'- cUCGCUGGu--GCAaCGacUGGAACCGC- -5'
18727 5' -55.7 NC_004682.1 + 25848 0.67 0.612271
Target:  5'- -uGCG-CCGCucguccggggUGCUGGCCUUGGUc -3'
miRNA:   3'- cuCGCuGGUGca--------ACGACUGGAACCGc -5'
18727 5' -55.7 NC_004682.1 + 46779 0.67 0.568193
Target:  5'- cGAGCGGCaCGCGguacccggUGCUGcacAUCUUcGGCGu -3'
miRNA:   3'- -CUCGCUG-GUGCa-------ACGAC---UGGAA-CCGC- -5'
18727 5' -55.7 NC_004682.1 + 41947 0.68 0.556197
Target:  5'- -cGCGGCCagcucgcGCGgucugUGCUGGCCccGGCa -3'
miRNA:   3'- cuCGCUGG-------UGCa----ACGACUGGaaCCGc -5'
18727 5' -55.7 NC_004682.1 + 12565 0.68 0.546436
Target:  5'- cAGCGACCAUGUugUGCUG-CCacaGCGa -3'
miRNA:   3'- cUCGCUGGUGCA--ACGACuGGaacCGC- -5'
18727 5' -55.7 NC_004682.1 + 46279 0.69 0.483021
Target:  5'- cGAGCGaacGCgGCGUUGCggccaucccucUGGCCgugGGCGu -3'
miRNA:   3'- -CUCGC---UGgUGCAACG-----------ACUGGaa-CCGC- -5'
18727 5' -55.7 NC_004682.1 + 46874 0.69 0.469739
Target:  5'- -uGuCGGCCugGaUGCUGGCCaugucgagcccgucUUGGCGa -3'
miRNA:   3'- cuC-GCUGGugCaACGACUGG--------------AACCGC- -5'
18727 5' -55.7 NC_004682.1 + 17674 0.7 0.402621
Target:  5'- uAGCGACCAUGaucggcacgacGCUGACCacGGCGc -3'
miRNA:   3'- cUCGCUGGUGCaa---------CGACUGGaaCCGC- -5'
18727 5' -55.7 NC_004682.1 + 45826 0.7 0.395239
Target:  5'- cAGCGACCGCGUcggccaauUGCUcGCCguaguaGGCGa -3'
miRNA:   3'- cUCGCUGGUGCA--------ACGAcUGGaa----CCGC- -5'
18727 5' -55.7 NC_004682.1 + 16856 0.72 0.334493
Target:  5'- --uCGGCCugGUgGCUGGCCUccUGGCu -3'
miRNA:   3'- cucGCUGGugCAaCGACUGGA--ACCGc -5'
18727 5' -55.7 NC_004682.1 + 3095 0.73 0.260061
Target:  5'- cGGUGACCuGCGUUGCUGACCacGGg- -3'
miRNA:   3'- cUCGCUGG-UGCAACGACUGGaaCCgc -5'
18727 5' -55.7 NC_004682.1 + 34414 0.74 0.240529
Target:  5'- uGAGCGACCccgaucagacGCGgaUGCUGGCCgacuacgGGCGg -3'
miRNA:   3'- -CUCGCUGG----------UGCa-ACGACUGGaa-----CCGC- -5'
18727 5' -55.7 NC_004682.1 + 12199 0.76 0.174353
Target:  5'- gGAGCGACaggGCGUUGUUGACCgccagguaGGCGu -3'
miRNA:   3'- -CUCGCUGg--UGCAACGACUGGaa------CCGC- -5'
18727 5' -55.7 NC_004682.1 + 33695 0.9 0.018611
Target:  5'- gGAGCGACCACGUUGgUcACCUUGGCGg -3'
miRNA:   3'- -CUCGCUGGUGCAACgAcUGGAACCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.