miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18728 3' -54.7 NC_004682.1 + 2673 0.65 0.749438
Target:  5'- cGGUGuGGCggcagcgaccucuGCCUGGggGCCuGAcauGAGCu -3'
miRNA:   3'- -CCAUcUCG-------------CGGACCuuCGG-CUc--UUCG- -5'
18728 3' -54.7 NC_004682.1 + 30294 0.66 0.739964
Target:  5'- aGGUAGuucAGCGCCgaguAGGCCcguGAGggGUc -3'
miRNA:   3'- -CCAUC---UCGCGGacc-UUCGG---CUCuuCG- -5'
18728 3' -54.7 NC_004682.1 + 33795 0.66 0.729332
Target:  5'- cGGcgGGAGcCGCCUGGGccucGUCGucggcAGggGCc -3'
miRNA:   3'- -CCa-UCUC-GCGGACCUu---CGGC-----UCuuCG- -5'
18728 3' -54.7 NC_004682.1 + 50607 0.66 0.729332
Target:  5'- gGGUAGGGguacacccCGCCUGG-GGUgGGGGuauGCa -3'
miRNA:   3'- -CCAUCUC--------GCGGACCuUCGgCUCUu--CG- -5'
18728 3' -54.7 NC_004682.1 + 30669 0.66 0.729332
Target:  5'- --cGGAGUuccuggGCCUGGuAGUCGAcuGAGGCc -3'
miRNA:   3'- ccaUCUCG------CGGACCuUCGGCU--CUUCG- -5'
18728 3' -54.7 NC_004682.1 + 14073 0.66 0.729332
Target:  5'- cGGUGGAcaaggcccucGC-CCUGG-AGCCGA-AGGCc -3'
miRNA:   3'- -CCAUCU----------CGcGGACCuUCGGCUcUUCG- -5'
18728 3' -54.7 NC_004682.1 + 35209 0.66 0.718601
Target:  5'- cGGgcGAGCGCUcGGcuucccccGGCUGGGucGCg -3'
miRNA:   3'- -CCauCUCGCGGaCCu-------UCGGCUCuuCG- -5'
18728 3' -54.7 NC_004682.1 + 13952 0.66 0.718601
Target:  5'- ---cGAGCGgCUGaGcAAGCCGAuAGGCg -3'
miRNA:   3'- ccauCUCGCgGAC-C-UUCGGCUcUUCG- -5'
18728 3' -54.7 NC_004682.1 + 48957 0.66 0.703434
Target:  5'- uGUGGAGUcccucgcccgcaggGCCUugcGGcccgaugGGGCCGGGGAGCc -3'
miRNA:   3'- cCAUCUCG--------------CGGA---CC-------UUCGGCUCUUCG- -5'
18728 3' -54.7 NC_004682.1 + 20699 0.66 0.701255
Target:  5'- aGUGGGGCGCuCaGGAgaucgcucgccugauGGCCGAGcAGa -3'
miRNA:   3'- cCAUCUCGCG-GaCCU---------------UCGGCUCuUCg -5'
18728 3' -54.7 NC_004682.1 + 38050 0.67 0.685932
Target:  5'- cGGggGGAuCGCUUGGGggaGGCCGGuuucGggGCg -3'
miRNA:   3'- -CCa-UCUcGCGGACCU---UCGGCU----CuuCG- -5'
18728 3' -54.7 NC_004682.1 + 48496 0.67 0.674922
Target:  5'- ----cAGCGCUUGGAAaCUGAGAagAGCa -3'
miRNA:   3'- ccaucUCGCGGACCUUcGGCUCU--UCG- -5'
18728 3' -54.7 NC_004682.1 + 49368 0.67 0.663871
Target:  5'- --cAGGGUGCCUgccgGGAAGuuGAcGGGCu -3'
miRNA:   3'- ccaUCUCGCGGA----CCUUCggCUcUUCG- -5'
18728 3' -54.7 NC_004682.1 + 25201 0.67 0.663871
Target:  5'- aGUGGAGCGCCcGGAcAGCgcuacuucgaCGGGAccgAGUg -3'
miRNA:   3'- cCAUCUCGCGGaCCU-UCG----------GCUCU---UCG- -5'
18728 3' -54.7 NC_004682.1 + 23428 0.67 0.663871
Target:  5'- aGGUGGcGGgGCCUGGAacuacGGCCaggacuucaccGAGGAcGCc -3'
miRNA:   3'- -CCAUC-UCgCGGACCU-----UCGG-----------CUCUU-CG- -5'
18728 3' -54.7 NC_004682.1 + 7659 0.67 0.65279
Target:  5'- uGGUGGGGUGCa-GGA--CCGGGcGGCg -3'
miRNA:   3'- -CCAUCUCGCGgaCCUucGGCUCuUCG- -5'
18728 3' -54.7 NC_004682.1 + 20516 0.67 0.65279
Target:  5'- --cAGAGgGCUaugcgGGAGGCCGAacGGCu -3'
miRNA:   3'- ccaUCUCgCGGa----CCUUCGGCUcuUCG- -5'
18728 3' -54.7 NC_004682.1 + 19709 0.67 0.65279
Target:  5'- aGUGGAuucUGCCUGGcuccaCCGAGGAGCc -3'
miRNA:   3'- cCAUCUc--GCGGACCuuc--GGCUCUUCG- -5'
18728 3' -54.7 NC_004682.1 + 14351 0.67 0.65279
Target:  5'- -cUGGAG-GCgCUGcGAGGCCGGaacGAGGCg -3'
miRNA:   3'- ccAUCUCgCG-GAC-CUUCGGCU---CUUCG- -5'
18728 3' -54.7 NC_004682.1 + 10080 0.67 0.65279
Target:  5'- cGUGGGGUGCCcgccagucGGGcuGGCCgguccagaucGAGAAGCa -3'
miRNA:   3'- cCAUCUCGCGGa-------CCU--UCGG----------CUCUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.