miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18729 5' -51.8 NC_004682.1 + 17751 0.66 0.87474
Target:  5'- uUCGCUCAgcUCGGCAACaCGcuggugaccAACcugGCACc -3'
miRNA:   3'- cAGCGAGU--AGCUGUUG-GC---------UUGa--CGUG- -5'
18729 5' -51.8 NC_004682.1 + 35088 0.66 0.866541
Target:  5'- -gUGCaUCAUCGACAuCCGcGCUgaccgGCGCa -3'
miRNA:   3'- caGCG-AGUAGCUGUuGGCuUGA-----CGUG- -5'
18729 5' -51.8 NC_004682.1 + 33919 0.66 0.866541
Target:  5'- aGUC-CUCAUCGACucAUCGGccACUGCu- -3'
miRNA:   3'- -CAGcGAGUAGCUGu-UGGCU--UGACGug -5'
18729 5' -51.8 NC_004682.1 + 32562 0.66 0.858079
Target:  5'- -cUGCUC--CGACGACCcu-CUGCGCg -3'
miRNA:   3'- caGCGAGuaGCUGUUGGcuuGACGUG- -5'
18729 5' -51.8 NC_004682.1 + 34531 0.66 0.849364
Target:  5'- cGUCGCggagCAggGAgAGCgucUGGGCUGCACg -3'
miRNA:   3'- -CAGCGa---GUagCUgUUG---GCUUGACGUG- -5'
18729 5' -51.8 NC_004682.1 + 17955 0.66 0.840404
Target:  5'- cUCGCagcguaCGUCGACccGACgGAGCUGgGCg -3'
miRNA:   3'- cAGCGa-----GUAGCUG--UUGgCUUGACgUG- -5'
18729 5' -51.8 NC_004682.1 + 31663 0.67 0.812156
Target:  5'- uUCGUUCG--GAguGCCGAACUGgACg -3'
miRNA:   3'- cAGCGAGUagCUguUGGCUUGACgUG- -5'
18729 5' -51.8 NC_004682.1 + 30777 0.67 0.812156
Target:  5'- -cCGgUgAUCGACAugCGAGCcGUGCg -3'
miRNA:   3'- caGCgAgUAGCUGUugGCUUGaCGUG- -5'
18729 5' -51.8 NC_004682.1 + 27767 0.67 0.812156
Target:  5'- -cCGUUCcggUGGCAGCgGAaccACUGCACa -3'
miRNA:   3'- caGCGAGua-GCUGUUGgCU---UGACGUG- -5'
18729 5' -51.8 NC_004682.1 + 46440 0.67 0.812156
Target:  5'- gGUCaGCUUGUCGGC-ACCGcGCUccGCGCc -3'
miRNA:   3'- -CAG-CGAGUAGCUGuUGGCuUGA--CGUG- -5'
18729 5' -51.8 NC_004682.1 + 18453 0.67 0.80232
Target:  5'- -cUGCUCGUcuacggCGACAGCgGGGC-GCACa -3'
miRNA:   3'- caGCGAGUA------GCUGUUGgCUUGaCGUG- -5'
18729 5' -51.8 NC_004682.1 + 15313 0.67 0.80232
Target:  5'- --gGUUCAUCGACuacGGCCcgguccagcagGAGCUGUACg -3'
miRNA:   3'- cagCGAGUAGCUG---UUGG-----------CUUGACGUG- -5'
18729 5' -51.8 NC_004682.1 + 2075 0.68 0.761182
Target:  5'- --gGUUCAgaCGGCAGCCGuguucCUGCACg -3'
miRNA:   3'- cagCGAGUa-GCUGUUGGCuu---GACGUG- -5'
18729 5' -51.8 NC_004682.1 + 38198 0.68 0.739712
Target:  5'- uUCGuCUaCGUCGaACAGCgCGAGCUGCu- -3'
miRNA:   3'- cAGC-GA-GUAGC-UGUUG-GCUUGACGug -5'
18729 5' -51.8 NC_004682.1 + 19906 0.68 0.739712
Target:  5'- --aGcCUCGUCGGCGAuCCGAcggGCgGCACg -3'
miRNA:   3'- cagC-GAGUAGCUGUU-GGCU---UGaCGUG- -5'
18729 5' -51.8 NC_004682.1 + 46122 0.7 0.650183
Target:  5'- uUCGUggccgCGUCGGCAgcGCCGAGCgacagcaGCACc -3'
miRNA:   3'- cAGCGa----GUAGCUGU--UGGCUUGa------CGUG- -5'
18729 5' -51.8 NC_004682.1 + 8550 0.72 0.52615
Target:  5'- -cCGCaugaGUCGGCAGCCGuGCUGCGg -3'
miRNA:   3'- caGCGag--UAGCUGUUGGCuUGACGUg -5'
18729 5' -51.8 NC_004682.1 + 28434 0.72 0.515223
Target:  5'- gGUCGCUCGgacUCGACGGucuuugaCGAcgACUGCACc -3'
miRNA:   3'- -CAGCGAGU---AGCUGUUg------GCU--UGACGUG- -5'
18729 5' -51.8 NC_004682.1 + 16890 0.77 0.298773
Target:  5'- cUCGCUCAUCGGCGcguucgguGCCGGugUcgGCGCu -3'
miRNA:   3'- cAGCGAGUAGCUGU--------UGGCUugA--CGUG- -5'
18729 5' -51.8 NC_004682.1 + 34356 0.92 0.029287
Target:  5'- gGUCGCUCAUCGACAACCGAACUcgACg -3'
miRNA:   3'- -CAGCGAGUAGCUGUUGGCUUGAcgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.