miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18730 3' -62.1 NC_004682.1 + 31916 0.67 0.310743
Target:  5'- -cGCGCCGuCGCCggagaucccacaucgGAGaggaacugauccguuGUGGCCCugGCg -3'
miRNA:   3'- gcUGCGGU-GCGG---------------CUC---------------CACCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 17376 0.67 0.304938
Target:  5'- aCGGCGgCA-GCCGGGGUGGuggcaCCCagaggcagucgaACGCg -3'
miRNA:   3'- -GCUGCgGUgCGGCUCCACC-----GGG------------UGCG- -5'
18730 3' -62.1 NC_004682.1 + 19455 0.67 0.302783
Target:  5'- uCGACGCCAacguCGCCGAGaacgucaagacccuGaUGGCCacaCugGCa -3'
miRNA:   3'- -GCUGCGGU----GCGGCUC--------------C-ACCGG---GugCG- -5'
18730 3' -62.1 NC_004682.1 + 25576 0.68 0.290791
Target:  5'- ---gGCCACGCCGug--GGCCUugACGCg -3'
miRNA:   3'- gcugCGGUGCGGCuccaCCGGG--UGCG- -5'
18730 3' -62.1 NC_004682.1 + 20882 0.68 0.290791
Target:  5'- aCGAUGCgACucCCGAGGccaucGCCUACGCg -3'
miRNA:   3'- -GCUGCGgUGc-GGCUCCac---CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 36718 0.68 0.290791
Target:  5'- aCGACgGCCugGaCgCGGGGcaucUGGgCCAUGCg -3'
miRNA:   3'- -GCUG-CGGugC-G-GCUCC----ACCgGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 41333 0.68 0.283913
Target:  5'- uGACGCCGaacagcagcCGCUGGGGgacGCCCAUcaGCu -3'
miRNA:   3'- gCUGCGGU---------GCGGCUCCac-CGGGUG--CG- -5'
18730 3' -62.1 NC_004682.1 + 2021 0.68 0.277164
Target:  5'- aCGGCGCaCcCGUCcAGGgugucgagGGUCCACGCg -3'
miRNA:   3'- -GCUGCG-GuGCGGcUCCa-------CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 24402 0.68 0.273176
Target:  5'- aCGGUGCUggACGCUGAGGgcaacccgauccggcUGGCCC-CGCc -3'
miRNA:   3'- -GCUGCGG--UGCGGCUCC---------------ACCGGGuGCG- -5'
18730 3' -62.1 NC_004682.1 + 36140 0.68 0.270543
Target:  5'- uGuCGCCACG-CGAcGuGUGGCCgAUGCu -3'
miRNA:   3'- gCuGCGGUGCgGCU-C-CACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 27688 0.68 0.270543
Target:  5'- gCGGCGauCC-CGCCGcuGUGGCuCCugGCc -3'
miRNA:   3'- -GCUGC--GGuGCGGCucCACCG-GGugCG- -5'
18730 3' -62.1 NC_004682.1 + 32977 0.68 0.264051
Target:  5'- aGaACGUCGCGCUGgcgugcuccAGGacgcucucaUGGCCCACGUc -3'
miRNA:   3'- gC-UGCGGUGCGGC---------UCC---------ACCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 45363 0.68 0.263408
Target:  5'- uCGACcguccaguaccagGCCGCGCCGAuGccGGCCCACu- -3'
miRNA:   3'- -GCUG-------------CGGUGCGGCU-CcaCCGGGUGcg -5'
18730 3' -62.1 NC_004682.1 + 38985 0.69 0.257685
Target:  5'- uCGACGCCGaaggcgucucauCGCCGuGGaacgGGCaCCugGUc -3'
miRNA:   3'- -GCUGCGGU------------GCGGCuCCa---CCG-GGugCG- -5'
18730 3' -62.1 NC_004682.1 + 7429 0.69 0.245331
Target:  5'- -cACGCCACGCCGc-GUGGaucaCCAuCGCc -3'
miRNA:   3'- gcUGCGGUGCGGCucCACCg---GGU-GCG- -5'
18730 3' -62.1 NC_004682.1 + 44564 0.69 0.245331
Target:  5'- aGAUGCCGCuuucccGCUcuucgGGGGUGGCCUcaACGUa -3'
miRNA:   3'- gCUGCGGUG------CGG-----CUCCACCGGG--UGCG- -5'
18730 3' -62.1 NC_004682.1 + 28488 0.69 0.241722
Target:  5'- gGAUGggucaCCGCGCCGAcaccugcgaaGGUGggcauguugcggagaGCCCACGCg -3'
miRNA:   3'- gCUGC-----GGUGCGGCU----------CCAC---------------CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 25848 0.69 0.233472
Target:  5'- -uGCGCCGCucguCCGGGGUgcuGGCCUugGUc -3'
miRNA:   3'- gcUGCGGUGc---GGCUCCA---CCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 44727 0.69 0.227726
Target:  5'- -cAUGCCgACGCCGccGGUGGCC-ACGUa -3'
miRNA:   3'- gcUGCGG-UGCGGCu-CCACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 6897 0.69 0.227726
Target:  5'- -aGCGuCCGCucaCCGAGGgcaucgcaaUGGCCCugGCg -3'
miRNA:   3'- gcUGC-GGUGc--GGCUCC---------ACCGGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.