Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18731 | 3' | -59.6 | NC_004682.1 | + | 30097 | 0.69 | 0.338942 |
Target: 5'- cCCGGaCCACCGgGCuccCUGCuuguCGAUGGu -3' miRNA: 3'- cGGCC-GGUGGUgCGu--GACGc---GCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 38567 | 0.69 | 0.315715 |
Target: 5'- gGCCGGUCACCG-GC-CUGCGUcAUGu -3' miRNA: 3'- -CGGCCGGUGGUgCGuGACGCGcUACc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 38858 | 0.69 | 0.315714 |
Target: 5'- -aUGGCaGCCGCGUcgaACUugaGCGCGAUGGc -3' miRNA: 3'- cgGCCGgUGGUGCG---UGA---CGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 24028 | 0.7 | 0.286643 |
Target: 5'- cCCGcGCCagggacucgcACCGCGUGCUGCGgggGAUGGa -3' miRNA: 3'- cGGC-CGG----------UGGUGCGUGACGCg--CUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5505 | 0.7 | 0.272917 |
Target: 5'- cCCGGaCAUCaACGCGCUGUGCGAc-- -3' miRNA: 3'- cGGCCgGUGG-UGCGUGACGCGCUacc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 38430 | 0.7 | 0.259723 |
Target: 5'- -gCGGCUGCCACGC-CUGUGCuccUGGc -3' miRNA: 3'- cgGCCGGUGGUGCGuGACGCGcu-ACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 41873 | 0.71 | 0.251429 |
Target: 5'- cGCCGaGCCGgaagcccucaagcuCCugGCGC-GCuGCGAUGGc -3' miRNA: 3'- -CGGC-CGGU--------------GGugCGUGaCG-CGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 44738 | 0.71 | 0.247054 |
Target: 5'- cGCCGGUgGCCACGUACUcccCGUGGUc- -3' miRNA: 3'- -CGGCCGgUGGUGCGUGAc--GCGCUAcc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 22965 | 0.71 | 0.240914 |
Target: 5'- cGCUGcuCC-CCugGCGCUcGCGUGGUGGa -3' miRNA: 3'- -CGGCc-GGuGGugCGUGA-CGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 22849 | 0.71 | 0.234901 |
Target: 5'- cCCGGa-GCC-CGCGCuggUGCGCGGUGGc -3' miRNA: 3'- cGGCCggUGGuGCGUG---ACGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 5617 | 0.71 | 0.229015 |
Target: 5'- cGCUGGa-ACCGCGCACU-CGCGGUcGGu -3' miRNA: 3'- -CGGCCggUGGUGCGUGAcGCGCUA-CC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 16228 | 0.71 | 0.225543 |
Target: 5'- cGUgGGCCACCucgGCGUggcgucguuccuggcGCUGUGCgGAUGGa -3' miRNA: 3'- -CGgCCGGUGG---UGCG---------------UGACGCG-CUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 32713 | 0.72 | 0.196274 |
Target: 5'- cGCCuuGGCCGCgauguccgaCGCGCcCUGCGCGAagcUGGc -3' miRNA: 3'- -CGG--CCGGUG---------GUGCGuGACGCGCU---ACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 6505 | 0.72 | 0.191232 |
Target: 5'- gGCgGGCUACU-CGCAagGCGCGGUGGu -3' miRNA: 3'- -CGgCCGGUGGuGCGUgaCGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 10626 | 0.73 | 0.163312 |
Target: 5'- cGUCGGCCACUcgAUGgGCgGCGgGAUGGu -3' miRNA: 3'- -CGGCCGGUGG--UGCgUGaCGCgCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 4382 | 0.75 | 0.135414 |
Target: 5'- aGCC-GCCGCCACGgGCgcggaGCGCGGUGc -3' miRNA: 3'- -CGGcCGGUGGUGCgUGa----CGCGCUACc -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 10754 | 0.75 | 0.128286 |
Target: 5'- uGCgGGCCACacaGCGCcucuCggGCGCGGUGGu -3' miRNA: 3'- -CGgCCGGUGg--UGCGu---Ga-CGCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 27969 | 0.75 | 0.120519 |
Target: 5'- gGCCGacgacggccaugauGCCACCGCGCACcaGCGCGGgcuccgGGa -3' miRNA: 3'- -CGGC--------------CGGUGGUGCGUGa-CGCGCUa-----CC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 23903 | 0.77 | 0.089829 |
Target: 5'- aCCGGCCACacccccgaggACGCgGCUGcCGCGAUGGg -3' miRNA: 3'- cGGCCGGUGg---------UGCG-UGAC-GCGCUACC- -5' |
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18731 | 3' | -59.6 | NC_004682.1 | + | 15709 | 0.77 | 0.087374 |
Target: 5'- aCCacGCCAUCGCGCAgUGCGUGGUGGc -3' miRNA: 3'- cGGc-CGGUGGUGCGUgACGCGCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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