miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18731 5' -57.1 NC_004682.1 + 24515 0.66 0.587101
Target:  5'- -gCCAggUCGgCGCGGacUACCGGggcugGGGCUu -3'
miRNA:   3'- gaGGU--AGCgGCGCU--AUGGCCa----CUCGA- -5'
18731 5' -57.1 NC_004682.1 + 37367 0.66 0.564405
Target:  5'- -gCCuUgGCCGgGAUGCCGGUcuuggauGGGCg -3'
miRNA:   3'- gaGGuAgCGGCgCUAUGGCCA-------CUCGa -5'
18731 5' -57.1 NC_004682.1 + 23103 0.67 0.554747
Target:  5'- -aCCAUCGgUGCGGUcGCCGcGUGGcGCa -3'
miRNA:   3'- gaGGUAGCgGCGCUA-UGGC-CACU-CGa -5'
18731 5' -57.1 NC_004682.1 + 30762 0.67 0.533469
Target:  5'- gUCUga-GCCGgGAUGCCGGUGAuCg -3'
miRNA:   3'- gAGGuagCGGCgCUAUGGCCACUcGa -5'
18731 5' -57.1 NC_004682.1 + 4862 0.67 0.502126
Target:  5'- cCUCCGUCGaacaagccaCGCGGagugaaggGCuCGGUGAGCc -3'
miRNA:   3'- -GAGGUAGCg--------GCGCUa-------UG-GCCACUCGa -5'
18731 5' -57.1 NC_004682.1 + 45713 0.68 0.481684
Target:  5'- cCUCC-UCGCCGaCGAagaucuccUGCCaGGUGuGGCUg -3'
miRNA:   3'- -GAGGuAGCGGC-GCU--------AUGG-CCAC-UCGA- -5'
18731 5' -57.1 NC_004682.1 + 26243 0.68 0.461654
Target:  5'- cCUCgGUgcCGuCCGCGAgcuuCCGGUGGGUg -3'
miRNA:   3'- -GAGgUA--GC-GGCGCUau--GGCCACUCGa -5'
18731 5' -57.1 NC_004682.1 + 16418 0.69 0.442071
Target:  5'- -aCCAUCGCCaaGAUGCCGG-GuGUc -3'
miRNA:   3'- gaGGUAGCGGcgCUAUGGCCaCuCGa -5'
18731 5' -57.1 NC_004682.1 + 15028 0.69 0.440139
Target:  5'- gCUCCcuacggacgacuUCGCUGCGcUGCCGGUucGGGCa -3'
miRNA:   3'- -GAGGu-----------AGCGGCGCuAUGGCCA--CUCGa -5'
18731 5' -57.1 NC_004682.1 + 16894 0.69 0.432458
Target:  5'- -cUCAUCGgCGCGuucgGUGCCGGUGucGGCg -3'
miRNA:   3'- gaGGUAGCgGCGC----UAUGGCCAC--UCGa -5'
18731 5' -57.1 NC_004682.1 + 9093 0.69 0.395264
Target:  5'- uCUCCcgGUCGCUGuCGAUccugACCGGcugGAGCa -3'
miRNA:   3'- -GAGG--UAGCGGC-GCUA----UGGCCa--CUCGa -5'
18731 5' -57.1 NC_004682.1 + 39734 0.7 0.377458
Target:  5'- gUCCGUCGCgGCGGgggUAUCGGUG-GUc -3'
miRNA:   3'- gAGGUAGCGgCGCU---AUGGCCACuCGa -5'
18731 5' -57.1 NC_004682.1 + 43931 0.7 0.3435
Target:  5'- -gCCAggGCCauuGCGAUGCCcucGGUGAGCg -3'
miRNA:   3'- gaGGUagCGG---CGCUAUGG---CCACUCGa -5'
18731 5' -57.1 NC_004682.1 + 25577 0.71 0.335361
Target:  5'- -gCCA-CGCCGUGGgccuugACgCGGUGGGCUa -3'
miRNA:   3'- gaGGUaGCGGCGCUa-----UG-GCCACUCGA- -5'
18731 5' -57.1 NC_004682.1 + 35159 1.08 0.00075
Target:  5'- uCUCCAUCGCCGCGAUACCGGUGAGCUg -3'
miRNA:   3'- -GAGGUAGCGGCGCUAUGGCCACUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.