miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18732 5' -61.5 NC_004682.1 + 6433 0.68 0.266391
Target:  5'- aUCCCGUCGuCCGCGUaGCgGaACCGg- -3'
miRNA:   3'- -AGGGCAGCuGGUGCG-CGgCgUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 14586 0.68 0.266391
Target:  5'- -gCCGUCGGCUACGUGuacaCCGCcCCGg- -3'
miRNA:   3'- agGGCAGCUGGUGCGC----GGCGuGGCaa -5'
18732 5' -61.5 NC_004682.1 + 46445 0.69 0.259901
Target:  5'- gCuuGUCGgcACCGCGCuCCGCGCCcGUg -3'
miRNA:   3'- aGggCAGC--UGGUGCGcGGCGUGG-CAa -5'
18732 5' -61.5 NC_004682.1 + 30566 0.69 0.253541
Target:  5'- cUCCCgGUCgGGCCACGCGgcCCGUGCgGUc -3'
miRNA:   3'- -AGGG-CAG-CUGGUGCGC--GGCGUGgCAa -5'
18732 5' -61.5 NC_004682.1 + 43526 0.69 0.24731
Target:  5'- gUCCCGgaCGAUCACGuUGCCGuCGCUGUc -3'
miRNA:   3'- -AGGGCa-GCUGGUGC-GCGGC-GUGGCAa -5'
18732 5' -61.5 NC_004682.1 + 47531 0.69 0.241205
Target:  5'- aUCCGUUGGCaccaGCGcCGCCGCuGCCGa- -3'
miRNA:   3'- aGGGCAGCUGg---UGC-GCGGCG-UGGCaa -5'
18732 5' -61.5 NC_004682.1 + 5097 0.69 0.235227
Target:  5'- aCCCGcacCGACCcccgugguCGaCGCCGCGCCGa- -3'
miRNA:   3'- aGGGCa--GCUGGu-------GC-GCGGCGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 26495 0.7 0.212008
Target:  5'- -gCCGUCGACCACGCaGCCcagcucuGC-CCGg- -3'
miRNA:   3'- agGGCAGCUGGUGCG-CGG-------CGuGGCaa -5'
18732 5' -61.5 NC_004682.1 + 44478 0.71 0.18687
Target:  5'- aCuuGUCGAgCAcCGC-CCGCGCCGUg -3'
miRNA:   3'- aGggCAGCUgGU-GCGcGGCGUGGCAa -5'
18732 5' -61.5 NC_004682.1 + 5047 0.71 0.182074
Target:  5'- aUCCCGcCGaaggGCUACGCguacgccgacGCCGCACCGg- -3'
miRNA:   3'- -AGGGCaGC----UGGUGCG----------CGGCGUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 39801 0.72 0.163533
Target:  5'- gCCC-UCGACCgcguauaGCGCGCCGC-CCGa- -3'
miRNA:   3'- aGGGcAGCUGG-------UGCGCGGCGuGGCaa -5'
18732 5' -61.5 NC_004682.1 + 30712 0.73 0.139831
Target:  5'- cCUCGUCGGCCAgGaagcacCGCCGCACCa-- -3'
miRNA:   3'- aGGGCAGCUGGUgC------GCGGCGUGGcaa -5'
18732 5' -61.5 NC_004682.1 + 33916 0.78 0.058095
Target:  5'- aUCCCGUCcaugccgaGGCCACaGCGCCGaCACCGg- -3'
miRNA:   3'- -AGGGCAG--------CUGGUG-CGCGGC-GUGGCaa -5'
18732 5' -61.5 NC_004682.1 + 35791 1.05 0.000498
Target:  5'- uUCCCGUCGACCACGCGCCGCACCGUUu -3'
miRNA:   3'- -AGGGCAGCUGGUGCGCGGCGUGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.