#
miRNA: 3'- caGGCAGCUGGCa--------CUUGGCCgGAGCC- -5'
miRNA: 3'- caGGCag-CUG-GC-ACU--UGGCCGGAGCC- -5'
miRNA: 3'- -CAGGCA-GCUGGCACU---UGGC-CGGa----GCC- -5'
miRNA: 3'- -CAGGCAGCUGGCACUUGGCCGGAGCC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 18733 | 3' | -58.3 | NC_004682.1 | + | 38635 | 0.7 | 0.346736 |
|
Target: 5'- -gCCGUCGACCGccguguugaGGAUCGG-CUCGGu -3' miRNA: 3'- caGGCAGCUGGCa--------CUUGGCCgGAGCC- -5' |
|||||||
| 18733 | 3' | -58.3 | NC_004682.1 | + | 47595 | 0.7 | 0.363102 |
|
Target: 5'- -cCCGgagGACgCGcUGGcgACCGGCCUCGGa -3' miRNA: 3'- caGGCag-CUG-GC-ACU--UGGCCGGAGCC- -5' |
|||||||
| 18733 | 3' | -58.3 | NC_004682.1 | + | 40324 | 0.74 | 0.206945 |
|
Target: 5'- aGUCCGUcCGACCGUGGuucACCGcGUCgagcgCGGu -3' miRNA: 3'- -CAGGCA-GCUGGCACU---UGGC-CGGa----GCC- -5' |
|||||||
| 18733 | 3' | -58.3 | NC_004682.1 | + | 36949 | 1.1 | 0.000547 |
|
Target: 5'- cGUCCGUCGACCGUGAACCGGCCUCGGu -3' miRNA: 3'- -CAGGCAGCUGGCACUUGGCCGGAGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home