Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18733 | 3' | -58.3 | NC_004682.1 | + | 420 | 0.67 | 0.512718 |
Target: 5'- cUUCGagGGCCGgucauacuugacauaGAACCGGCCUCcaGGg -3' miRNA: 3'- cAGGCagCUGGCa--------------CUUGGCCGGAG--CC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 6435 | 0.66 | 0.584308 |
Target: 5'- -cCCGUCGuCCGcguagcgGAACCGGgCCUucucuucgCGGa -3' miRNA: 3'- caGGCAGCuGGCa------CUUGGCC-GGA--------GCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 9725 | 0.68 | 0.443105 |
Target: 5'- -cCUGUCGuucUCGUcugaGAAcCCGGCCUCGGc -3' miRNA: 3'- caGGCAGCu--GGCA----CUU-GGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 25851 | 0.67 | 0.501617 |
Target: 5'- -gCCGcUCGuCCGggguGCUGGCCUUGGu -3' miRNA: 3'- caGGC-AGCuGGCacu-UGGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 26000 | 0.66 | 0.563272 |
Target: 5'- cGUCC-UCaGCCGUcgcGAugagGCCGGCgUCGGa -3' miRNA: 3'- -CAGGcAGcUGGCA---CU----UGGCCGgAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 30961 | 0.68 | 0.433727 |
Target: 5'- -cUUGUCGACCuucGGcugGCCGGUCUCGGu -3' miRNA: 3'- caGGCAGCUGGca-CU---UGGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 31198 | 0.68 | 0.452596 |
Target: 5'- cGUCCuccggGUCGACCGUGAugguCaacGUCUCGGu -3' miRNA: 3'- -CAGG-----CAGCUGGCACUu---Ggc-CGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 32722 | 0.69 | 0.406304 |
Target: 5'- uUCUucCGACCca-GACCGGCCUCGGc -3' miRNA: 3'- cAGGcaGCUGGcacUUGGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 32945 | 0.66 | 0.573768 |
Target: 5'- cUCgGUCagGACCGaccGGCUGGCCUCGa -3' miRNA: 3'- cAGgCAG--CUGGCac-UUGGCCGGAGCc -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 36949 | 1.1 | 0.000547 |
Target: 5'- cGUCCGUCGACCGUGAACCGGCCUCGGu -3' miRNA: 3'- -CAGGCAGCUGGCACUUGGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 37323 | 0.68 | 0.462196 |
Target: 5'- -cCCGUCGuGCCGacguaccGGACUGGCCUUGc -3' miRNA: 3'- caGGCAGC-UGGCa------CUUGGCCGGAGCc -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 37367 | 0.66 | 0.573768 |
Target: 5'- -gCC-UUGGCCGgGAuGCCGGUCUUGGa -3' miRNA: 3'- caGGcAGCUGGCaCU-UGGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 38635 | 0.7 | 0.346736 |
Target: 5'- -gCCGUCGACCGccguguugaGGAUCGG-CUCGGu -3' miRNA: 3'- caGGCAGCUGGCa--------CUUGGCCgGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 40324 | 0.74 | 0.206945 |
Target: 5'- aGUCCGUcCGACCGUGGuucACCGcGUCgagcgCGGu -3' miRNA: 3'- -CAGGCA-GCUGGCACU---UGGC-CGGa----GCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 41281 | 0.68 | 0.481711 |
Target: 5'- --gCGUCGAacagCGUcuGGCCGGUCUCGGg -3' miRNA: 3'- cagGCAGCUg---GCAc-UUGGCCGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 41965 | 0.7 | 0.349966 |
Target: 5'- -gCUGgggGACCGUGAcgccuacggcgucggGCCGGCgCUCGGa -3' miRNA: 3'- caGGCag-CUGGCACU---------------UGGCCG-GAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 42851 | 0.68 | 0.471903 |
Target: 5'- aUCuCGUCGACCG-GcAGCCaguacgagucGCCUCGGg -3' miRNA: 3'- cAG-GCAGCUGGCaC-UUGGc---------CGGAGCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 44545 | 0.69 | 0.415324 |
Target: 5'- -gCCGUgGACCGUGAACagccaGcGCUUCGc -3' miRNA: 3'- caGGCAgCUGGCACUUGg----C-CGGAGCc -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 45590 | 0.66 | 0.563272 |
Target: 5'- -gUCGUCgGACuCGUG-GCCGGUCUgGGc -3' miRNA: 3'- caGGCAG-CUG-GCACuUGGCCGGAgCC- -5' |
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18733 | 3' | -58.3 | NC_004682.1 | + | 45675 | 0.68 | 0.480726 |
Target: 5'- -aUCGUCGGCaggaucuCGcGGGCCuuGGCCUCGGa -3' miRNA: 3'- caGGCAGCUG-------GCaCUUGG--CCGGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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