miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18734 3' -52.6 NC_004682.1 + 12365 0.66 0.827563
Target:  5'- gUCAUGGGcgacUUCagCCAggUCAUCUGGGGc -3'
miRNA:   3'- -AGUGUCC----AGGa-GGUuuGGUAGACCUC- -5'
18734 3' -52.6 NC_004682.1 + 22242 0.67 0.78863
Target:  5'- cUACGGGgggaggccggaUCgCUCCGGuGCCAUCUGGGu -3'
miRNA:   3'- aGUGUCC-----------AG-GAGGUU-UGGUAGACCUc -5'
18734 3' -52.6 NC_004682.1 + 35074 0.67 0.778437
Target:  5'- -uGCGGGUCCuUCCAGugCAUCa---- -3'
miRNA:   3'- agUGUCCAGG-AGGUUugGUAGaccuc -5'
18734 3' -52.6 NC_004682.1 + 34509 0.67 0.768083
Target:  5'- gCGCGGccccaGUCCUUCAuGCCGUCgcGGAGc -3'
miRNA:   3'- aGUGUC-----CAGGAGGUuUGGUAGa-CCUC- -5'
18734 3' -52.6 NC_004682.1 + 31049 0.68 0.736183
Target:  5'- gUC-CGGGaCCgUCCAGAUCGUCgcgGGGGa -3'
miRNA:   3'- -AGuGUCCaGG-AGGUUUGGUAGa--CCUC- -5'
18734 3' -52.6 NC_004682.1 + 6941 0.68 0.714343
Target:  5'- cCGCAGGggagcgCagUCCAcACCGUcCUGGAGg -3'
miRNA:   3'- aGUGUCCa-----Gg-AGGUuUGGUA-GACCUC- -5'
18734 3' -52.6 NC_004682.1 + 33418 0.69 0.635835
Target:  5'- gUugGGGgCCUCCuGAGCCGcCUGGGGc -3'
miRNA:   3'- aGugUCCaGGAGG-UUUGGUaGACCUC- -5'
18734 3' -52.6 NC_004682.1 + 25711 0.7 0.601905
Target:  5'- gUCACcgAGGUgCUCUgAGAUCGUCUGGAc -3'
miRNA:   3'- -AGUG--UCCAgGAGG-UUUGGUAGACCUc -5'
18734 3' -52.6 NC_004682.1 + 32153 0.7 0.56822
Target:  5'- gUCGuCuGGUUCUUCu--CCAUCUGGAGa -3'
miRNA:   3'- -AGU-GuCCAGGAGGuuuGGUAGACCUC- -5'
18734 3' -52.6 NC_004682.1 + 28454 0.72 0.491903
Target:  5'- cCACAGGUgCUuuG-ACCAagUCUGGAGg -3'
miRNA:   3'- aGUGUCCAgGAggUuUGGU--AGACCUC- -5'
18734 3' -52.6 NC_004682.1 + 37696 1.09 0.001728
Target:  5'- cUCACAGGUCCUCCAAACCAUCUGGAGc -3'
miRNA:   3'- -AGUGUCCAGGAGGUUUGGUAGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.