Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 25822 | 0.7 | 0.463083 |
Target: 5'- gCCUCGcccUGGAUGCGagcaGAUGCcGCCg -3' miRNA: 3'- aGGAGC---AUCUACGCgag-CUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 47151 | 0.7 | 0.42406 |
Target: 5'- gCUUCGgcGAUG-GCUcCGAUGUGGCCu -3' miRNA: 3'- aGGAGCauCUACgCGA-GCUGCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 17994 | 0.7 | 0.42406 |
Target: 5'- gCCUCGUuGcgGCcuucGCUCaGGCGgCAGCCa -3' miRNA: 3'- aGGAGCAuCuaCG----CGAG-CUGC-GUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 37999 | 0.7 | 0.433633 |
Target: 5'- gCCUCGUAGAUcuucgacaGCGcCUCcuCGguGCCg -3' miRNA: 3'- aGGAGCAUCUA--------CGC-GAGcuGCguCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 42151 | 0.7 | 0.453148 |
Target: 5'- gCgUCGUGGAU-CGCUCGGCcccGCgaGGCCg -3' miRNA: 3'- aGgAGCAUCUAcGCGAGCUG---CG--UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 29320 | 0.7 | 0.463082 |
Target: 5'- cUCCUgGUGGucgGUGC-CGACGUGGaCCg -3' miRNA: 3'- -AGGAgCAUCua-CGCGaGCUGCGUC-GG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 22713 | 0.7 | 0.424061 |
Target: 5'- gUCCUCGgcuucgAGGUcucuguccGCGCUCGccgccgcgaGCAGCCa -3' miRNA: 3'- -AGGAGCa-----UCUA--------CGCGAGCug-------CGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 45702 | 0.71 | 0.366789 |
Target: 5'- gCCUCGgAGAUGCccGCagcacgcgccaggaUCGGCGCGGCg -3' miRNA: 3'- aGGAGCaUCUACG--CG--------------AGCUGCGUCGg -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 40397 | 0.72 | 0.352274 |
Target: 5'- cUCCUCGUAGGccaagGCGCUC-ACGgugAGCCc -3' miRNA: 3'- -AGGAGCAUCUa----CGCGAGcUGCg--UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 33018 | 0.73 | 0.304353 |
Target: 5'- aCgUCGaGGAUGUGCUUGAgGUAGUCg -3' miRNA: 3'- aGgAGCaUCUACGCGAGCUgCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 9658 | 0.73 | 0.304353 |
Target: 5'- aCUUCGUGGAcGCcCUCGACGC-GCUg -3' miRNA: 3'- aGGAGCAUCUaCGcGAGCUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 10493 | 0.73 | 0.289531 |
Target: 5'- gCUUCGcGGugaccGCGCUCGACGCGGUg -3' miRNA: 3'- aGGAGCaUCua---CGCGAGCUGCGUCGg -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 4699 | 0.75 | 0.223863 |
Target: 5'- gCCUCGgugcuGcUGuCGCUCGGCGCuGCCg -3' miRNA: 3'- aGGAGCau---CuAC-GCGAGCUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 33970 | 0.76 | 0.180838 |
Target: 5'- cUCUUUGguGAUGCGCUCGuACGguGCCu -3' miRNA: 3'- -AGGAGCauCUACGCGAGC-UGCguCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 37733 | 1.12 | 0.000549 |
Target: 5'- cUCCUCGUAGAUGCGCUCGACGCAGCCu -3' miRNA: 3'- -AGGAGCAUCUACGCGAGCUGCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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