Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 4619 | 0.67 | 0.600541 |
Target: 5'- aCUUCGUGGAgGUGUggGGCGaCGGCUa -3' miRNA: 3'- aGGAGCAUCUaCGCGagCUGC-GUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 4699 | 0.75 | 0.223863 |
Target: 5'- gCCUCGgugcuGcUGuCGCUCGGCGCuGCCg -3' miRNA: 3'- aGGAGCau---CuAC-GCGAGCUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 9658 | 0.73 | 0.304353 |
Target: 5'- aCUUCGUGGAcGCcCUCGACGC-GCUg -3' miRNA: 3'- aGGAGCAUCUaCGcGAGCUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 10493 | 0.73 | 0.289531 |
Target: 5'- gCUUCGcGGugaccGCGCUCGACGCGGUg -3' miRNA: 3'- aGGAGCaUCua---CGCGAGCUGCGUCGg -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 10687 | 0.67 | 0.589587 |
Target: 5'- gUCCUggCGgcGAUcCuGCUCGAUGCuGCCg -3' miRNA: 3'- -AGGA--GCauCUAcG-CGAGCUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 14883 | 0.68 | 0.535517 |
Target: 5'- gCCUCGaccacgccuGGUGUGUUCGGCGUcucGGCUg -3' miRNA: 3'- aGGAGCau-------CUACGCGAGCUGCG---UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 16792 | 0.66 | 0.698104 |
Target: 5'- uUCCUCGgccugacccguaUGGGUugguuggucacagGCGUcuUCGugGCGGCUg -3' miRNA: 3'- -AGGAGC------------AUCUA-------------CGCG--AGCugCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 17994 | 0.7 | 0.42406 |
Target: 5'- gCCUCGUuGcgGCcuucGCUCaGGCGgCAGCCa -3' miRNA: 3'- aGGAGCAuCuaCG----CGAG-CUGC-GUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 21668 | 0.66 | 0.688341 |
Target: 5'- -aCUCGgcGAUgGCGUcccUCGGUGCAGUCg -3' miRNA: 3'- agGAGCauCUA-CGCG---AGCUGCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 22713 | 0.7 | 0.424061 |
Target: 5'- gUCCUCGgcuucgAGGUcucuguccGCGCUCGccgccgcgaGCAGCCa -3' miRNA: 3'- -AGGAGCa-----UCUA--------CGCGAGCug-------CGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 23607 | 0.67 | 0.622521 |
Target: 5'- aCUUCGccGAUGuCGCuUCGGCgGUGGCCa -3' miRNA: 3'- aGGAGCauCUAC-GCG-AGCUG-CGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 25822 | 0.7 | 0.463083 |
Target: 5'- gCCUCGcccUGGAUGCGagcaGAUGCcGCCg -3' miRNA: 3'- aGGAGC---AUCUACGCgag-CUGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 26637 | 0.67 | 0.600541 |
Target: 5'- aUCCUgGgcGAUGCGgaugaaCGAC-CAGCCg -3' miRNA: 3'- -AGGAgCauCUACGCga----GCUGcGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 27557 | 0.66 | 0.688342 |
Target: 5'- cUCCuUCGauccgcucGAUGCGCUCcgucCGCAGCUc -3' miRNA: 3'- -AGG-AGCau------CUACGCGAGcu--GCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 28078 | 0.67 | 0.611522 |
Target: 5'- cCCUCGgcGAcgaaGaCGCUCGGgCGUGGCUg -3' miRNA: 3'- aGGAGCauCUa---C-GCGAGCU-GCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 29320 | 0.7 | 0.463082 |
Target: 5'- cUCCUgGUGGucgGUGC-CGACGUGGaCCg -3' miRNA: 3'- -AGGAgCAUCua-CGCGaGCUGCGUC-GG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 31322 | 0.68 | 0.535517 |
Target: 5'- gUCCUCGUaccagaacGGGU-CGCcugCGAUGCAGaCCa -3' miRNA: 3'- -AGGAGCA--------UCUAcGCGa--GCUGCGUC-GG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 32109 | 0.66 | 0.709965 |
Target: 5'- -gUUCGUcGAUGCGCUgcUGGagggcugccuuCGCGGCCu -3' miRNA: 3'- agGAGCAuCUACGCGA--GCU-----------GCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 32198 | 0.69 | 0.493547 |
Target: 5'- cUUCUUGcGGuUGuCGCUCuGCGCGGCCa -3' miRNA: 3'- -AGGAGCaUCuAC-GCGAGcUGCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 33018 | 0.73 | 0.304353 |
Target: 5'- aCgUCGaGGAUGUGCUUGAgGUAGUCg -3' miRNA: 3'- aGgAGCaUCUACGCGAGCUgCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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