miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18734 5' -55.6 NC_004682.1 + 25822 0.7 0.463083
Target:  5'- gCCUCGcccUGGAUGCGagcaGAUGCcGCCg -3'
miRNA:   3'- aGGAGC---AUCUACGCgag-CUGCGuCGG- -5'
18734 5' -55.6 NC_004682.1 + 29320 0.7 0.463082
Target:  5'- cUCCUgGUGGucgGUGC-CGACGUGGaCCg -3'
miRNA:   3'- -AGGAgCAUCua-CGCGaGCUGCGUC-GG- -5'
18734 5' -55.6 NC_004682.1 + 42151 0.7 0.453148
Target:  5'- gCgUCGUGGAU-CGCUCGGCcccGCgaGGCCg -3'
miRNA:   3'- aGgAGCAUCUAcGCGAGCUG---CG--UCGG- -5'
18734 5' -55.6 NC_004682.1 + 37999 0.7 0.433633
Target:  5'- gCCUCGUAGAUcuucgacaGCGcCUCcuCGguGCCg -3'
miRNA:   3'- aGGAGCAUCUA--------CGC-GAGcuGCguCGG- -5'
18734 5' -55.6 NC_004682.1 + 22713 0.7 0.424061
Target:  5'- gUCCUCGgcuucgAGGUcucuguccGCGCUCGccgccgcgaGCAGCCa -3'
miRNA:   3'- -AGGAGCa-----UCUA--------CGCGAGCug-------CGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 47151 0.7 0.42406
Target:  5'- gCUUCGgcGAUG-GCUcCGAUGUGGCCu -3'
miRNA:   3'- aGGAGCauCUACgCGA-GCUGCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 17994 0.7 0.42406
Target:  5'- gCCUCGUuGcgGCcuucGCUCaGGCGgCAGCCa -3'
miRNA:   3'- aGGAGCAuCuaCG----CGAG-CUGC-GUCGG- -5'
18734 5' -55.6 NC_004682.1 + 45702 0.71 0.366789
Target:  5'- gCCUCGgAGAUGCccGCagcacgcgccaggaUCGGCGCGGCg -3'
miRNA:   3'- aGGAGCaUCUACG--CG--------------AGCUGCGUCGg -5'
18734 5' -55.6 NC_004682.1 + 40397 0.72 0.352274
Target:  5'- cUCCUCGUAGGccaagGCGCUC-ACGgugAGCCc -3'
miRNA:   3'- -AGGAGCAUCUa----CGCGAGcUGCg--UCGG- -5'
18734 5' -55.6 NC_004682.1 + 33018 0.73 0.304353
Target:  5'- aCgUCGaGGAUGUGCUUGAgGUAGUCg -3'
miRNA:   3'- aGgAGCaUCUACGCGAGCUgCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 9658 0.73 0.304353
Target:  5'- aCUUCGUGGAcGCcCUCGACGC-GCUg -3'
miRNA:   3'- aGGAGCAUCUaCGcGAGCUGCGuCGG- -5'
18734 5' -55.6 NC_004682.1 + 10493 0.73 0.289531
Target:  5'- gCUUCGcGGugaccGCGCUCGACGCGGUg -3'
miRNA:   3'- aGGAGCaUCua---CGCGAGCUGCGUCGg -5'
18734 5' -55.6 NC_004682.1 + 4699 0.75 0.223863
Target:  5'- gCCUCGgugcuGcUGuCGCUCGGCGCuGCCg -3'
miRNA:   3'- aGGAGCau---CuAC-GCGAGCUGCGuCGG- -5'
18734 5' -55.6 NC_004682.1 + 33970 0.76 0.180838
Target:  5'- cUCUUUGguGAUGCGCUCGuACGguGCCu -3'
miRNA:   3'- -AGGAGCauCUACGCGAGC-UGCguCGG- -5'
18734 5' -55.6 NC_004682.1 + 37733 1.12 0.000549
Target:  5'- cUCCUCGUAGAUGCGCUCGACGCAGCCu -3'
miRNA:   3'- -AGGAGCAUCUACGCGAGCUGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.