miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18735 5' -61.9 NC_004682.1 + 6917 0.66 0.350575
Target:  5'- uGGCagagGCCAgcCGCCUG-GCUCCc-GCAg -3'
miRNA:   3'- gCCGa---CGGU--GCGGACaCGAGGacCGU- -5'
18735 5' -61.9 NC_004682.1 + 39554 0.66 0.342457
Target:  5'- aCGGCU--UGCGCUUGUGCgcucgaUCCUGGUu -3'
miRNA:   3'- -GCCGAcgGUGCGGACACG------AGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 39698 0.67 0.289467
Target:  5'- cCGGCUGa-ACGUCUcgaccuucgGCUCCUGGCc -3'
miRNA:   3'- -GCCGACggUGCGGAca-------CGAGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 42679 0.67 0.268806
Target:  5'- uCGGCUgggGUCGaucUGCUUGUGCgUCUUGGCGa -3'
miRNA:   3'- -GCCGA---CGGU---GCGGACACG-AGGACCGU- -5'
18735 5' -61.9 NC_004682.1 + 16224 0.68 0.262189
Target:  5'- uCGGCguggGCCACcucgGCgUGgcgucGUUCCUGGCGc -3'
miRNA:   3'- -GCCGa---CGGUG----CGgACa----CGAGGACCGU- -5'
18735 5' -61.9 NC_004682.1 + 19995 0.68 0.24313
Target:  5'- aCGGUgaaGUCGCGCCUGgaggcGCUCCcGaGCAu -3'
miRNA:   3'- -GCCGa--CGGUGCGGACa----CGAGGaC-CGU- -5'
18735 5' -61.9 NC_004682.1 + 27688 0.69 0.21394
Target:  5'- gCGGCgauCC-CGCCgcUGUgGCUCCUGGCc -3'
miRNA:   3'- -GCCGac-GGuGCGG--ACA-CGAGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 16840 0.69 0.21394
Target:  5'- gCGGCUgcacccGCCAUcgGCCUGguggcugGcCUCCUGGCu -3'
miRNA:   3'- -GCCGA------CGGUG--CGGACa------C-GAGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 12123 0.69 0.197908
Target:  5'- uGGCgGUCaacaACGcCCUGUcGCUCCUGGUg -3'
miRNA:   3'- gCCGaCGG----UGC-GGACA-CGAGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 20119 0.7 0.18781
Target:  5'- uGGCUGgUGCGgCgGUGCuUCCUGGCc -3'
miRNA:   3'- gCCGACgGUGCgGaCACG-AGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 24911 0.7 0.164531
Target:  5'- cCGGCUGgaggcgcaaCCGCGCC-GUGCgUCUGGCu -3'
miRNA:   3'- -GCCGAC---------GGUGCGGaCACGaGGACCGu -5'
18735 5' -61.9 NC_004682.1 + 38430 1.07 0.000224
Target:  5'- gCGGCUGCCACGCCUGUGCUCCUGGCAc -3'
miRNA:   3'- -GCCGACGGUGCGGACACGAGGACCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.