miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18736 3' -50.5 NC_004682.1 + 5665 0.66 0.90258
Target:  5'- aGAUuuGgUCAUUAGGGgacugACCUGCGCu -3'
miRNA:   3'- aCUAggCaAGUGGUUCU-----UGGACGUGu -5'
18736 3' -50.5 NC_004682.1 + 3092 0.66 0.895322
Target:  5'- gUGAaagucUUCGUcua-CAAGAACCUGCACGc -3'
miRNA:   3'- -ACU-----AGGCAagugGUUCUUGGACGUGU- -5'
18736 3' -50.5 NC_004682.1 + 6899 0.67 0.879936
Target:  5'- -cGUCCGcUCACCGAGGGCau-CGCAa -3'
miRNA:   3'- acUAGGCaAGUGGUUCUUGgacGUGU- -5'
18736 3' -50.5 NC_004682.1 + 41458 0.67 0.87182
Target:  5'- aGGUCCGacaGCCGAGu-CCUGUugGg -3'
miRNA:   3'- aCUAGGCaagUGGUUCuuGGACGugU- -5'
18736 3' -50.5 NC_004682.1 + 21927 0.67 0.863431
Target:  5'- --uUCCGcaugaUUCACCGGcccaAGCCUGCACGa -3'
miRNA:   3'- acuAGGC-----AAGUGGUUc---UUGGACGUGU- -5'
18736 3' -50.5 NC_004682.1 + 19821 0.67 0.863431
Target:  5'- cGAUCCaggUCGCCGAGGcGCUgaUGCGCc -3'
miRNA:   3'- aCUAGGca-AGUGGUUCU-UGG--ACGUGu -5'
18736 3' -50.5 NC_004682.1 + 4210 0.67 0.854778
Target:  5'- aGAUCCug-CGCCcgcAGAugCUGCGCc -3'
miRNA:   3'- aCUAGGcaaGUGGu--UCUugGACGUGu -5'
18736 3' -50.5 NC_004682.1 + 27578 0.67 0.854778
Target:  5'- aGAgCCGcuggUUCGCCuGGAGCUUGCugGu -3'
miRNA:   3'- aCUaGGC----AAGUGGuUCUUGGACGugU- -5'
18736 3' -50.5 NC_004682.1 + 10825 0.68 0.816732
Target:  5'- cGGUCgGc-CACCGAGGGCCUcggccucGCGCAg -3'
miRNA:   3'- aCUAGgCaaGUGGUUCUUGGA-------CGUGU- -5'
18736 3' -50.5 NC_004682.1 + 23239 0.69 0.755935
Target:  5'- aGAUCCGcaaggaCAUCGGuGGCCUGCGCGa -3'
miRNA:   3'- aCUAGGCaa----GUGGUUcUUGGACGUGU- -5'
18736 3' -50.5 NC_004682.1 + 3449 0.69 0.754855
Target:  5'- cGAUCCGgaCACCuGGuacgccaacaugcAGCCUGCugGg -3'
miRNA:   3'- aCUAGGCaaGUGGuUC-------------UUGGACGugU- -5'
18736 3' -50.5 NC_004682.1 + 19805 0.69 0.745079
Target:  5'- cGGUCCcggacuacucGUUCACCGAagcagcccaggcGAACCgGCGCAu -3'
miRNA:   3'- aCUAGG----------CAAGUGGUU------------CUUGGaCGUGU- -5'
18736 3' -50.5 NC_004682.1 + 29198 0.72 0.620237
Target:  5'- cGAUCCGcUUCAuCCAGGGccgaguugaGCCUGCGg- -3'
miRNA:   3'- aCUAGGC-AAGU-GGUUCU---------UGGACGUgu -5'
18736 3' -50.5 NC_004682.1 + 41104 0.76 0.366388
Target:  5'- cGAUCaggUCGCCGAGGAUCUGCugGu -3'
miRNA:   3'- aCUAGgcaAGUGGUUCUUGGACGugU- -5'
18736 3' -50.5 NC_004682.1 + 39160 1.1 0.002282
Target:  5'- gUGAUCCGUUCACCAAGAACCUGCACAg -3'
miRNA:   3'- -ACUAGGCAAGUGGUUCUUGGACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.