miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18738 5' -62 NC_004682.1 + 33454 0.66 0.356184
Target:  5'- cUGCcucuGGGUGccaccACCCCGGCuGCcGCcgUUGCCGc -3'
miRNA:   3'- -ACG----CCUAC-----UGGGGCCG-CG-CG--AACGGC- -5'
18738 5' -62 NC_004682.1 + 43404 0.67 0.324561
Target:  5'- gGCGGcgaugGUGAUCCacgCGGCGUggcgugGCUUGCCc -3'
miRNA:   3'- aCGCC-----UACUGGG---GCCGCG------CGAACGGc -5'
18738 5' -62 NC_004682.1 + 48886 0.67 0.324561
Target:  5'- aUGCGGAacaGCUUCGGgccuUGCGCUUGUCGc -3'
miRNA:   3'- -ACGCCUac-UGGGGCC----GCGCGAACGGC- -5'
18738 5' -62 NC_004682.1 + 10218 0.67 0.316989
Target:  5'- gGCGG-UGAUCUCGucCGCGCUcGCCa -3'
miRNA:   3'- aCGCCuACUGGGGCc-GCGCGAaCGGc -5'
18738 5' -62 NC_004682.1 + 20436 0.67 0.30955
Target:  5'- -cCGGGccuACCCCGGCGUGCagcgGCUGa -3'
miRNA:   3'- acGCCUac-UGGGGCCGCGCGaa--CGGC- -5'
18738 5' -62 NC_004682.1 + 42559 0.68 0.281132
Target:  5'- cUGCGGccaacugaGUGAguUUCCGGCGCuGCUUGgCGa -3'
miRNA:   3'- -ACGCC--------UACU--GGGGCCGCG-CGAACgGC- -5'
18738 5' -62 NC_004682.1 + 15725 0.68 0.281132
Target:  5'- gUGCGuGGUGGCCggCGGUGUGC--GCCGg -3'
miRNA:   3'- -ACGC-CUACUGGg-GCCGCGCGaaCGGC- -5'
18738 5' -62 NC_004682.1 + 39819 0.68 0.261205
Target:  5'- cGCGccgcccGAUG-CCUCGGCuGCGCUcuUGCCa -3'
miRNA:   3'- aCGC------CUACuGGGGCCG-CGCGA--ACGGc -5'
18738 5' -62 NC_004682.1 + 2588 0.68 0.261205
Target:  5'- cUGCGGAcccgccaaUGACCaaGGUGuCGCggcugGCCGa -3'
miRNA:   3'- -ACGCCU--------ACUGGggCCGC-GCGaa---CGGC- -5'
18738 5' -62 NC_004682.1 + 25909 0.69 0.236445
Target:  5'- -cUGGGUGACCCagccagacgcaCGGCGCGgUUGCg- -3'
miRNA:   3'- acGCCUACUGGG-----------GCCGCGCgAACGgc -5'
18738 5' -62 NC_004682.1 + 15591 0.69 0.236445
Target:  5'- gGCGGcacGGCCUCGGgGCcGCU-GCCGu -3'
miRNA:   3'- aCGCCua-CUGGGGCCgCG-CGAaCGGC- -5'
18738 5' -62 NC_004682.1 + 38879 0.7 0.192826
Target:  5'- aGCGcGAUGGCCUCGGCGauCUUGguCCGc -3'
miRNA:   3'- aCGC-CUACUGGGGCCGCgcGAAC--GGC- -5'
18738 5' -62 NC_004682.1 + 41630 0.7 0.187899
Target:  5'- cGCGGAUGGCUcgcaucaccuguCgGGUGCGCggGUCGa -3'
miRNA:   3'- aCGCCUACUGG------------GgCCGCGCGaaCGGC- -5'
18738 5' -62 NC_004682.1 + 40691 1.08 0.00026
Target:  5'- uUGCGGAUGACCCCGGCGCGCUUGCCGu -3'
miRNA:   3'- -ACGCCUACUGGGGCCGCGCGAACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.