Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18739 | 3' | -63.8 | NC_004682.1 | + | 25557 | 0.66 | 0.30062 |
Target: 5'- -gGCCgCUCACGCGCCacugggccacGCCgUgGGCCu- -3' miRNA: 3'- agCGG-GAGUGCGUGG----------CGGgA-CCGGcu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 12750 | 0.66 | 0.30062 |
Target: 5'- aUCGCCCUUggcauaugggaGCGCGCugaCGCCCcgaaaccGGCCu- -3' miRNA: 3'- -AGCGGGAG-----------UGCGUG---GCGGGa------CCGGcu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 8660 | 0.66 | 0.29357 |
Target: 5'- -gGCCCUCACcgaggagcagGaCGCgGCCUcgcggGGCCGAg -3' miRNA: 3'- agCGGGAGUG----------C-GUGgCGGGa----CCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 35919 | 0.66 | 0.29357 |
Target: 5'- aCGCCUUCuCGUcgggucGCCGCUCgcaGCCGAg -3' miRNA: 3'- aGCGGGAGuGCG------UGGCGGGac-CGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 28775 | 0.66 | 0.286649 |
Target: 5'- cUCcCCCUCACagGCCGUCa-GGCCGAg -3' miRNA: 3'- -AGcGGGAGUGcgUGGCGGgaCCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 47664 | 0.66 | 0.279857 |
Target: 5'- gUUGCCCgcgccCugGC-CCGCCgUGGugcCCGAg -3' miRNA: 3'- -AGCGGGa----GugCGuGGCGGgACC---GGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 23419 | 0.67 | 0.266012 |
Target: 5'- aCGCCaguGCGCcgacggcgauuguGCCGCCCgUGGCCa- -3' miRNA: 3'- aGCGGgagUGCG-------------UGGCGGG-ACCGGcu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 40307 | 0.67 | 0.257722 |
Target: 5'- cUCGaCUUCGCGCACUGCUCguagcgcgaccugGGCCa- -3' miRNA: 3'- -AGCgGGAGUGCGUGGCGGGa------------CCGGcu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 33494 | 0.67 | 0.253968 |
Target: 5'- -gGCCCuUCAuCGCGCCGUCCaUGacGCCGu -3' miRNA: 3'- agCGGG-AGU-GCGUGGCGGG-AC--CGGCu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 38571 | 0.67 | 0.248421 |
Target: 5'- -gGCCCUCACGgAUCGCgCCgaccugcucgguguaGGUCGAc -3' miRNA: 3'- agCGGGAGUGCgUGGCG-GGa--------------CCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 48515 | 0.67 | 0.247811 |
Target: 5'- aUCGCCCUUGuCGCcuuugUCGCCCUucGGCCc- -3' miRNA: 3'- -AGCGGGAGU-GCGu----GGCGGGA--CCGGcu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 27392 | 0.67 | 0.247811 |
Target: 5'- gCGUCCUCG-GUGaaGUCCUGGCCGu -3' miRNA: 3'- aGCGGGAGUgCGUggCGGGACCGGCu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 48597 | 0.67 | 0.241778 |
Target: 5'- -gGCCCUUGCGgGCCGgugggaCCUgcugGGCCGGu -3' miRNA: 3'- agCGGGAGUGCgUGGC------GGGa---CCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 32686 | 0.67 | 0.235868 |
Target: 5'- aUGUUCggCAgG-ACCGCCCUGGCCGc -3' miRNA: 3'- aGCGGGa-GUgCgUGGCGGGACCGGCu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 2299 | 0.68 | 0.23008 |
Target: 5'- -gGCCCcCAaGguCCGUCCgGGCCGAa -3' miRNA: 3'- agCGGGaGUgCguGGCGGGaCCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 30325 | 0.68 | 0.23008 |
Target: 5'- uUCGgCCUCcCGCAuaGCCCUcugGGCCa- -3' miRNA: 3'- -AGCgGGAGuGCGUggCGGGA---CCGGcu -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 48967 | 0.68 | 0.23008 |
Target: 5'- cUCGCCCgcaGgGCcuuGCgGCCCgauggGGCCGGg -3' miRNA: 3'- -AGCGGGag-UgCG---UGgCGGGa----CCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 36680 | 0.68 | 0.229507 |
Target: 5'- cUGCCCUUguaguagGCGUAguccguCCGCuCCUGGCUGGc -3' miRNA: 3'- aGCGGGAG-------UGCGU------GGCG-GGACCGGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 2001 | 0.68 | 0.218862 |
Target: 5'- -aGCCCgacgUACGuCACCGCC-UGGgCGAa -3' miRNA: 3'- agCGGGa---GUGC-GUGGCGGgACCgGCU- -5' |
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18739 | 3' | -63.8 | NC_004682.1 | + | 15712 | 0.68 | 0.213431 |
Target: 5'- aCGCCaUCGCGCAgUGCgUggUGGCCGGc -3' miRNA: 3'- aGCGGgAGUGCGUgGCGgG--ACCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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