Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18739 | 5' | -57.5 | NC_004682.1 | + | 41737 | 1.08 | 0.000648 |
Target: 5'- gCUCCAGCCGGUCAGGAUCGACAGCGAc -3' miRNA: 3'- -GAGGUCGGCCAGUCCUAGCUGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 29026 | 0.8 | 0.077493 |
Target: 5'- uCUCCAGCag--CGGGAUCGGCAGCGGc -3' miRNA: 3'- -GAGGUCGgccaGUCCUAGCUGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 32938 | 0.79 | 0.086795 |
Target: 5'- gCUCCAGCuCGGUCAGGAcCGAcCGGCu- -3' miRNA: 3'- -GAGGUCG-GCCAGUCCUaGCU-GUCGcu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 25516 | 0.74 | 0.203244 |
Target: 5'- -gCCAGaaGGUCAGGAggGACAGCa- -3' miRNA: 3'- gaGGUCggCCAGUCCUagCUGUCGcu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 41293 | 0.74 | 0.208662 |
Target: 5'- gUCUGGCCGGUCucGGGGUCGACgcccAGCu- -3' miRNA: 3'- gAGGUCGGCCAG--UCCUAGCUG----UCGcu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 48069 | 0.72 | 0.279579 |
Target: 5'- uUCCAGUCGGcgaugucucgaugggUCAGGccggUGACGGCGAg -3' miRNA: 3'- gAGGUCGGCC---------------AGUCCua--GCUGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 43277 | 0.71 | 0.313214 |
Target: 5'- gUCCGGCUcugGGUCcGGGucaaagcgcUCGGCGGCGAu -3' miRNA: 3'- gAGGUCGG---CCAGuCCU---------AGCUGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 4971 | 0.71 | 0.298225 |
Target: 5'- -cUCGGgCGGUCuGGAUCGccACAGCGGc -3' miRNA: 3'- gaGGUCgGCCAGuCCUAGC--UGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 30762 | 0.7 | 0.361559 |
Target: 5'- gUCUgAGCCGGgaugcCGGuGAUCGACAuGCGAg -3' miRNA: 3'- gAGG-UCGGCCa----GUC-CUAGCUGU-CGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 34557 | 0.7 | 0.353151 |
Target: 5'- gCUgCAcGCCGGUCGGuGuucacAUCGACGGUGAc -3' miRNA: 3'- -GAgGU-CGGCCAGUC-C-----UAGCUGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 13884 | 0.69 | 0.387606 |
Target: 5'- aUCCaccgaGGCCGGuUCAcGGUCGACGGaCGAg -3' miRNA: 3'- gAGG-----UCGGCC-AGUcCUAGCUGUC-GCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 35481 | 0.69 | 0.414857 |
Target: 5'- gUCCGGgUGGUCcGGGUCG-CAGaCGAu -3' miRNA: 3'- gAGGUCgGCCAGuCCUAGCuGUC-GCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 4501 | 0.69 | 0.424199 |
Target: 5'- -cCCGGCgGGcUCGGGGccgcacgcgcuUCGACAGCa- -3' miRNA: 3'- gaGGUCGgCC-AGUCCU-----------AGCUGUCGcu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 29086 | 0.69 | 0.405643 |
Target: 5'- gUCCuGCCGGgagaugucggCGGGGUCGGCuuCGAg -3' miRNA: 3'- gAGGuCGGCCa---------GUCCUAGCUGucGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 33612 | 0.68 | 0.433665 |
Target: 5'- -gCUGGCCagGGUCAGGAaCGACuGCGu -3' miRNA: 3'- gaGGUCGG--CCAGUCCUaGCUGuCGCu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 36170 | 0.68 | 0.48275 |
Target: 5'- -cCCAGCCGGUCGGcGUCcACAGgcCGGu -3' miRNA: 3'- gaGGUCGGCCAGUCcUAGcUGUC--GCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 3114 | 0.68 | 0.472712 |
Target: 5'- -aCCAucGCCGGUUAcGGGUCGAUcacuggcgcaGGCGGc -3' miRNA: 3'- gaGGU--CGGCCAGU-CCUAGCUG----------UCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 42466 | 0.68 | 0.452959 |
Target: 5'- -aCUGGCUGGcCGGGGUCGGCcucccuGCGGc -3' miRNA: 3'- gaGGUCGGCCaGUCCUAGCUGu-----CGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 42726 | 0.68 | 0.46278 |
Target: 5'- cCUCCAGCguCGGgaaCGGGGUucgCGACGGCu- -3' miRNA: 3'- -GAGGUCG--GCCa--GUCCUA---GCUGUCGcu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 26425 | 0.67 | 0.53436 |
Target: 5'- -gCCAGCCGGaUCGGG-UUGcccuCAGCGu -3' miRNA: 3'- gaGGUCGGCC-AGUCCuAGCu---GUCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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