Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18739 | 5' | -57.5 | NC_004682.1 | + | 18117 | 0.66 | 0.549172 |
Target: 5'- -gCCgaGGCCGGUCuGGGUCGGaagaaggcccgcgaAGCGGc -3' miRNA: 3'- gaGG--UCGGCCAGuCCUAGCUg-------------UCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 30590 | 0.66 | 0.576997 |
Target: 5'- gCUCCAcacGCgGGUCGGuAUCGACAaccGCGu -3' miRNA: 3'- -GAGGU---CGgCCAGUCcUAGCUGU---CGCu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 27261 | 0.66 | 0.587787 |
Target: 5'- cCUCCAGCaCGucCGGGAUCaGCGGCu- -3' miRNA: 3'- -GAGGUCG-GCcaGUCCUAGcUGUCGcu -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 5110 | 0.66 | 0.598613 |
Target: 5'- gCUUCAGCCacaccuGG-CAGGAgaucuUCGuCGGCGAg -3' miRNA: 3'- -GAGGUCGG------CCaGUCCU-----AGCuGUCGCU- -5' |
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18739 | 5' | -57.5 | NC_004682.1 | + | 29026 | 0.8 | 0.077493 |
Target: 5'- uCUCCAGCag--CGGGAUCGGCAGCGGc -3' miRNA: 3'- -GAGGUCGgccaGUCCUAGCUGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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