miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18740 3' -60.7 NC_004682.1 + 46361 0.66 0.423797
Target:  5'- gGGUGCGAGggaacGCCuCGCGGaGAGCCa -3'
miRNA:   3'- gUCGCGCUCgac--CGGcGCGUC-CUUGG- -5'
18740 3' -60.7 NC_004682.1 + 5441 0.66 0.423797
Target:  5'- -cGCGUGcGCUGGCCGaucugaAGuGGGCCg -3'
miRNA:   3'- guCGCGCuCGACCGGCgcg---UC-CUUGG- -5'
18740 3' -60.7 NC_004682.1 + 8274 0.66 0.423797
Target:  5'- gCAGCGcCGgaaacucacucAGUUGGCCGCagAGGcGCCg -3'
miRNA:   3'- -GUCGC-GC-----------UCGACCGGCGcgUCCuUGG- -5'
18740 3' -60.7 NC_004682.1 + 5011 0.66 0.423797
Target:  5'- ---gGCGAGCaauUGGCCGaCGCGGucGCUg -3'
miRNA:   3'- gucgCGCUCG---ACCGGC-GCGUCcuUGG- -5'
18740 3' -60.7 NC_004682.1 + 40411 0.66 0.422871
Target:  5'- aGGCGCucacgguGAGC---CCGUGCAGGAACa -3'
miRNA:   3'- gUCGCG-------CUCGaccGGCGCGUCCUUGg -5'
18740 3' -60.7 NC_004682.1 + 48367 0.66 0.414595
Target:  5'- uCGGUGCcuucGAuCUGGUCGCcCAGGAGCa -3'
miRNA:   3'- -GUCGCG----CUcGACCGGCGcGUCCUUGg -5'
18740 3' -60.7 NC_004682.1 + 3148 0.66 0.409133
Target:  5'- gCGGCGCagcagccgccaacucGGGCaccacggcgGGCCaggGCGCGGGcAACCg -3'
miRNA:   3'- -GUCGCG---------------CUCGa--------CCGG---CGCGUCC-UUGG- -5'
18740 3' -60.7 NC_004682.1 + 20945 0.66 0.396564
Target:  5'- uCGGCGCGuucGGCaGGuCUG-GCGGGAGCg -3'
miRNA:   3'- -GUCGCGC---UCGaCC-GGCgCGUCCUUGg -5'
18740 3' -60.7 NC_004682.1 + 22966 0.66 0.395676
Target:  5'- cUAGCGgaagcccucCGGGCUGGCCuucGgGCugguccgGGGGGCCg -3'
miRNA:   3'- -GUCGC---------GCUCGACCGG---CgCG-------UCCUUGG- -5'
18740 3' -60.7 NC_004682.1 + 46223 0.66 0.395676
Target:  5'- uCGGCaGCGAGCgUGGCCuC-CGGGAcgaugauGCCu -3'
miRNA:   3'- -GUCG-CGCUCG-ACCGGcGcGUCCU-------UGG- -5'
18740 3' -60.7 NC_004682.1 + 16513 0.66 0.387741
Target:  5'- uCAGaCGCGGauGCUGGCCGacuacgggcgGCAGG-GCUa -3'
miRNA:   3'- -GUC-GCGCU--CGACCGGCg---------CGUCCuUGG- -5'
18740 3' -60.7 NC_004682.1 + 11569 0.66 0.387741
Target:  5'- aAGCGCGcAGUUGG-UGCGUGaGAGCCc -3'
miRNA:   3'- gUCGCGC-UCGACCgGCGCGUcCUUGG- -5'
18740 3' -60.7 NC_004682.1 + 39322 0.66 0.379047
Target:  5'- uCAGCGgGAGgUGGCUGC-Cc-GAGCCc -3'
miRNA:   3'- -GUCGCgCUCgACCGGCGcGucCUUGG- -5'
18740 3' -60.7 NC_004682.1 + 27747 0.66 0.378185
Target:  5'- cCAGCGUucGGGCaaugaGGCCGUuccggugGCAgcGGAACCa -3'
miRNA:   3'- -GUCGCG--CUCGa----CCGGCG-------CGU--CCUUGG- -5'
18740 3' -60.7 NC_004682.1 + 3685 0.67 0.362056
Target:  5'- aAG-GCGAGCUGaCCGCcacgGCGGGAGUCg -3'
miRNA:   3'- gUCgCGCUCGACcGGCG----CGUCCUUGG- -5'
18740 3' -60.7 NC_004682.1 + 34514 0.67 0.362056
Target:  5'- gCAGCGUGGuCgaccucuucGGCCagacucCGCAGGAGCCa -3'
miRNA:   3'- -GUCGCGCUcGa--------CCGGc-----GCGUCCUUGG- -5'
18740 3' -60.7 NC_004682.1 + 16389 0.67 0.362056
Target:  5'- cCGGCGCGAGCUGaaccagaugacGCuCGCccaGCAgagGGAACg -3'
miRNA:   3'- -GUCGCGCUCGAC-----------CG-GCG---CGU---CCUUGg -5'
18740 3' -60.7 NC_004682.1 + 43506 0.67 0.33997
Target:  5'- gAGCGCG-GCUGcgaacggguccuuGCCccagcccuugaggcgGCGCAGGAugCc -3'
miRNA:   3'- gUCGCGCuCGAC-------------CGG---------------CGCGUCCUugG- -5'
18740 3' -60.7 NC_004682.1 + 30301 0.67 0.329691
Target:  5'- uCAGCGcCGAGUaGGCC-CGUgAGGggUCu -3'
miRNA:   3'- -GUCGC-GCUCGaCCGGcGCG-UCCuuGG- -5'
18740 3' -60.7 NC_004682.1 + 44697 0.67 0.327351
Target:  5'- gCAGCGgccCGccgucguacgccuuGGCguaGGCCGCGUAGcGGGCCa -3'
miRNA:   3'- -GUCGC---GC--------------UCGa--CCGGCGCGUC-CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.