miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18740 5' -56.2 NC_004682.1 + 27258 0.66 0.633947
Target:  5'- -cGuCCUCCAGCaCGUCCgGGAUCa- -3'
miRNA:   3'- aaCuGGAGGUUGcGUAGGgUCUGGca -5'
18740 5' -56.2 NC_004682.1 + 36935 0.66 0.633947
Target:  5'- -aGACCUCCcaAACuCGUCCgucGACCGUg -3'
miRNA:   3'- aaCUGGAGG--UUGcGUAGGgu-CUGGCA- -5'
18740 5' -56.2 NC_004682.1 + 19300 0.66 0.632832
Target:  5'- -cGACCUCCAggucaucgaGCGCAcgcugggcaUCCCGauggaggacauguGGCCGa -3'
miRNA:   3'- aaCUGGAGGU---------UGCGU---------AGGGU-------------CUGGCa -5'
18740 5' -56.2 NC_004682.1 + 24199 0.66 0.622805
Target:  5'- cUGACCgacuaCCAGaGCAUCUCGGgcACCGUc -3'
miRNA:   3'- aACUGGa----GGUUgCGUAGGGUC--UGGCA- -5'
18740 5' -56.2 NC_004682.1 + 41541 0.66 0.600557
Target:  5'- cUGGCCgUCCucGCGguUCCagauGACCGUg -3'
miRNA:   3'- aACUGG-AGGu-UGCguAGGgu--CUGGCA- -5'
18740 5' -56.2 NC_004682.1 + 36494 0.66 0.600557
Target:  5'- -cGGCCUCgCAGCGCc-UCCAGAgCCGc -3'
miRNA:   3'- aaCUGGAG-GUUGCGuaGGGUCU-GGCa -5'
18740 5' -56.2 NC_004682.1 + 41564 0.66 0.58947
Target:  5'- aUGACCaCCAGCGCGgggaagucUCCgUAGACCu- -3'
miRNA:   3'- aACUGGaGGUUGCGU--------AGG-GUCUGGca -5'
18740 5' -56.2 NC_004682.1 + 1458 0.67 0.567414
Target:  5'- -gGACCUucaccugggCCAACGUGuUCCCAGuCCGc -3'
miRNA:   3'- aaCUGGA---------GGUUGCGU-AGGGUCuGGCa -5'
18740 5' -56.2 NC_004682.1 + 34369 0.67 0.556463
Target:  5'- --cGCCUCguCGGCGCAUCUCGuuGACCGa -3'
miRNA:   3'- aacUGGAG--GUUGCGUAGGGU--CUGGCa -5'
18740 5' -56.2 NC_004682.1 + 36156 0.67 0.556463
Target:  5'- gUGGCCgaugcugucCCAGCcggucgGCGUCCaCAGGCCGg -3'
miRNA:   3'- aACUGGa--------GGUUG------CGUAGG-GUCUGGCa -5'
18740 5' -56.2 NC_004682.1 + 17133 0.67 0.545574
Target:  5'- cUGGCUUCCGGCGCGgguccugCCCAG-CUa- -3'
miRNA:   3'- aACUGGAGGUUGCGUa------GGGUCuGGca -5'
18740 5' -56.2 NC_004682.1 + 36143 0.67 0.533676
Target:  5'- cUGGuCCUCCAAgauCGCGUccacguuguucagCCCAGugCGUg -3'
miRNA:   3'- aACU-GGAGGUU---GCGUA-------------GGGUCugGCA- -5'
18740 5' -56.2 NC_004682.1 + 24817 0.68 0.492307
Target:  5'- gUGACCcCCAACGCGUuggugucggCCUggaAGACCGc -3'
miRNA:   3'- aACUGGaGGUUGCGUA---------GGG---UCUGGCa -5'
18740 5' -56.2 NC_004682.1 + 32412 0.68 0.47167
Target:  5'- -cGAguUCUCCGACGCAUCcagcgCCAGuucGCCGUg -3'
miRNA:   3'- aaCU--GGAGGUUGCGUAG-----GGUC---UGGCA- -5'
18740 5' -56.2 NC_004682.1 + 43034 0.68 0.461516
Target:  5'- -gGAUgUCCugguACGCGUCCCAGuCCu- -3'
miRNA:   3'- aaCUGgAGGu---UGCGUAGGGUCuGGca -5'
18740 5' -56.2 NC_004682.1 + 3243 0.68 0.461516
Target:  5'- -aGGCCggucgCCAGCGCGUCCUccgGGAgCGc -3'
miRNA:   3'- aaCUGGa----GGUUGCGUAGGG---UCUgGCa -5'
18740 5' -56.2 NC_004682.1 + 40858 0.68 0.461516
Target:  5'- gUGAagCUCUgcguugAGCGCGUUCCAGAUCGUg -3'
miRNA:   3'- aACUg-GAGG------UUGCGUAGGGUCUGGCA- -5'
18740 5' -56.2 NC_004682.1 + 10700 0.69 0.422108
Target:  5'- -gGGCCaCCAACGCcggCCUAGACCu- -3'
miRNA:   3'- aaCUGGaGGUUGCGua-GGGUCUGGca -5'
18740 5' -56.2 NC_004682.1 + 42983 0.69 0.412576
Target:  5'- -gGGCCUCCAGgGCGUCgUAGagcauGCCGg -3'
miRNA:   3'- aaCUGGAGGUUgCGUAGgGUC-----UGGCa -5'
18740 5' -56.2 NC_004682.1 + 47194 0.7 0.393916
Target:  5'- -aGACCUCCgAACGUguaGUCCCccACCGUc -3'
miRNA:   3'- aaCUGGAGG-UUGCG---UAGGGucUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.