miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18741 5' -55.1 NC_004682.1 + 34465 0.66 0.740045
Target:  5'- gCUCGcGCCGGAaguucgagACgGCCAGUCGAc--- -3'
miRNA:   3'- -GGGC-UGGCCU--------UGgUGGUCAGCUucaa -5'
18741 5' -55.1 NC_004682.1 + 40329 0.66 0.740045
Target:  5'- gUCCGACCGuGGuUCACCGcGUCGAGc-- -3'
miRNA:   3'- -GGGCUGGC-CUuGGUGGU-CAGCUUcaa -5'
18741 5' -55.1 NC_004682.1 + 5614 0.66 0.718867
Target:  5'- gCCCG-CUGGAACCGCgCAcUCGcGGUc -3'
miRNA:   3'- -GGGCuGGCCUUGGUG-GUcAGCuUCAa -5'
18741 5' -55.1 NC_004682.1 + 13231 0.66 0.708143
Target:  5'- cCCUGAUCGGGuucaucggcgACUACCAGcCGGaucAGUUg -3'
miRNA:   3'- -GGGCUGGCCU----------UGGUGGUCaGCU---UCAA- -5'
18741 5' -55.1 NC_004682.1 + 5573 0.66 0.708143
Target:  5'- aCCCGAacaCCGGAcgcGCCaACCAcaUCGAAGa- -3'
miRNA:   3'- -GGGCU---GGCCU---UGG-UGGUc-AGCUUCaa -5'
18741 5' -55.1 NC_004682.1 + 40471 0.66 0.708143
Target:  5'- cCCCGACuCGGAACCcguCA-UCGAGGa- -3'
miRNA:   3'- -GGGCUG-GCCUUGGug-GUcAGCUUCaa -5'
18741 5' -55.1 NC_004682.1 + 15763 0.66 0.707067
Target:  5'- cCCUGGuCCucaucaaGGAGCUACCGGUCGGcucgcGGUUc -3'
miRNA:   3'- -GGGCU-GG-------CCUUGGUGGUCAGCU-----UCAA- -5'
18741 5' -55.1 NC_004682.1 + 27021 0.66 0.697345
Target:  5'- gUCGACCGGAACaugCGGUCGAu--- -3'
miRNA:   3'- gGGCUGGCCUUGgugGUCAGCUucaa -5'
18741 5' -55.1 NC_004682.1 + 24493 0.66 0.697345
Target:  5'- gCCGACaggGGAACaGgCGGUCGAAGa- -3'
miRNA:   3'- gGGCUGg--CCUUGgUgGUCAGCUUCaa -5'
18741 5' -55.1 NC_004682.1 + 33714 0.66 0.686483
Target:  5'- cCuuGGCgGGAGCCGCCuuGGcCGggGc- -3'
miRNA:   3'- -GggCUGgCCUUGGUGG--UCaGCuuCaa -5'
18741 5' -55.1 NC_004682.1 + 41060 0.67 0.675569
Target:  5'- gCUCGACCGucuUCACCAGUCGGc--- -3'
miRNA:   3'- -GGGCUGGCcuuGGUGGUCAGCUucaa -5'
18741 5' -55.1 NC_004682.1 + 33792 0.67 0.675569
Target:  5'- cCUCGGCgGGAGCCGCCugggccucGUCGucGg- -3'
miRNA:   3'- -GGGCUGgCCUUGGUGGu-------CAGCuuCaa -5'
18741 5' -55.1 NC_004682.1 + 49778 0.67 0.675569
Target:  5'- gCUGuCCGGGcguACUGCCAGUCGGAc-- -3'
miRNA:   3'- gGGCuGGCCU---UGGUGGUCAGCUUcaa -5'
18741 5' -55.1 NC_004682.1 + 13078 0.67 0.675569
Target:  5'- gUCCGuaaccCCGaGGGCUACCuGUCGGAGa- -3'
miRNA:   3'- -GGGCu----GGC-CUUGGUGGuCAGCUUCaa -5'
18741 5' -55.1 NC_004682.1 + 37378 0.67 0.664614
Target:  5'- gCCagGGCCGGGGCgUACCGGgUGAGGUa -3'
miRNA:   3'- -GGg-CUGGCCUUG-GUGGUCaGCUUCAa -5'
18741 5' -55.1 NC_004682.1 + 36097 0.67 0.664614
Target:  5'- cCCCGGaccUCGGugucACCACC-GUCGAAGc- -3'
miRNA:   3'- -GGGCU---GGCCu---UGGUGGuCAGCUUCaa -5'
18741 5' -55.1 NC_004682.1 + 13018 0.68 0.620594
Target:  5'- aCCGACCcGGACUACC--UCGAAGa- -3'
miRNA:   3'- gGGCUGGcCUUGGUGGucAGCUUCaa -5'
18741 5' -55.1 NC_004682.1 + 43440 0.68 0.620594
Target:  5'- gCCC-ACCGGAuuGCCGuCUGcGUCGAAGUg -3'
miRNA:   3'- -GGGcUGGCCU--UGGU-GGU-CAGCUUCAa -5'
18741 5' -55.1 NC_004682.1 + 25945 0.68 0.60959
Target:  5'- cUCCG-CCGGGuCCugCGGUCGAucAGa- -3'
miRNA:   3'- -GGGCuGGCCUuGGugGUCAGCU--UCaa -5'
18741 5' -55.1 NC_004682.1 + 20286 0.68 0.60959
Target:  5'- gCCCGACCGGGagAUCACCAaGgacagccCGGAGc- -3'
miRNA:   3'- -GGGCUGGCCU--UGGUGGU-Ca------GCUUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.