miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18743 3' -59.8 NC_004682.1 + 50726 0.66 0.442561
Target:  5'- gGUGCCGAGacgGGguGCAGa--CGGGGUg -3'
miRNA:   3'- -CGCGGCUCg--CUguCGUCgugGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 20379 0.66 0.442561
Target:  5'- -gGCCGAGCaGAcCGGUcuGGaCAUgGAGGCu -3'
miRNA:   3'- cgCGGCUCG-CU-GUCG--UC-GUGgCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 7764 0.66 0.432182
Target:  5'- aGCGUCGGcGUGACaAGCAGgaGCUgcguaagGAGGCa -3'
miRNA:   3'- -CGCGGCU-CGCUG-UCGUCg-UGG-------CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 27734 0.67 0.423797
Target:  5'- uGCGCCacGCGGCGaCcGCACCGAuGGUu -3'
miRNA:   3'- -CGCGGcuCGCUGUcGuCGUGGCU-CCG- -5'
18743 3' -59.8 NC_004682.1 + 5009 0.67 0.423797
Target:  5'- aCGgCGAGCaauuggccGAC-GCGGuCGCUGAGGCu -3'
miRNA:   3'- cGCgGCUCG--------CUGuCGUC-GUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 7299 0.67 0.423797
Target:  5'- cGUGCUGAGgGACAGCgacGGCAacgugaucguCCGGGa- -3'
miRNA:   3'- -CGCGGCUCgCUGUCG---UCGU----------GGCUCcg -5'
18743 3' -59.8 NC_004682.1 + 40346 0.67 0.423797
Target:  5'- cGCGUCGAGCG-CGGU--CACCGcgaagccucgcuGGGCc -3'
miRNA:   3'- -CGCGGCUCGCuGUCGucGUGGC------------UCCG- -5'
18743 3' -59.8 NC_004682.1 + 37140 0.67 0.414595
Target:  5'- -aGUCGAuGCgGGCGGU-GCGCCGAGaGCu -3'
miRNA:   3'- cgCGGCU-CG-CUGUCGuCGUGGCUC-CG- -5'
18743 3' -59.8 NC_004682.1 + 33925 0.67 0.414595
Target:  5'- aUGCCGAG-GcCA-CAGCGCCGAcaccGGCa -3'
miRNA:   3'- cGCGGCUCgCuGUcGUCGUGGCU----CCG- -5'
18743 3' -59.8 NC_004682.1 + 7571 0.67 0.414595
Target:  5'- -gGCCG-GCG--GGC-GCAUCGAGGCc -3'
miRNA:   3'- cgCGGCuCGCugUCGuCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 9797 0.67 0.411858
Target:  5'- -gGUCGAGCGGaagaacaagaucuuCGGCGGCGCgUGGGaGCa -3'
miRNA:   3'- cgCGGCUCGCU--------------GUCGUCGUG-GCUC-CG- -5'
18743 3' -59.8 NC_004682.1 + 4130 0.67 0.396564
Target:  5'- gGUuUCGAGCGGCAcGCGGUACCcGGuGCu -3'
miRNA:   3'- -CGcGGCUCGCUGU-CGUCGUGGcUC-CG- -5'
18743 3' -59.8 NC_004682.1 + 16258 0.67 0.396564
Target:  5'- gGCGCUGuGCgGAUGGaAGUAcuCCGAGGCc -3'
miRNA:   3'- -CGCGGCuCG-CUGUCgUCGU--GGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 39996 0.67 0.396564
Target:  5'- cUGCgGAGCGuCuGC-GCgagGCCGAGGCc -3'
miRNA:   3'- cGCGgCUCGCuGuCGuCG---UGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 43792 0.67 0.396564
Target:  5'- aGCuCCGGGUGAUGGU--UAUCGAGGCu -3'
miRNA:   3'- -CGcGGCUCGCUGUCGucGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 30395 0.67 0.396564
Target:  5'- gGCGCUcAGCcGCuGCA-CGCCGGGGUa -3'
miRNA:   3'- -CGCGGcUCGcUGuCGUcGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 16087 0.67 0.387741
Target:  5'- cGCGCaCG-GCaACGGCAGCuacgacaucaCGGGGCu -3'
miRNA:   3'- -CGCG-GCuCGcUGUCGUCGug--------GCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 33491 0.67 0.387741
Target:  5'- cCGCCGccAGCGGCcu--GCugCGGGGCc -3'
miRNA:   3'- cGCGGC--UCGCUGucguCGugGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 8357 0.67 0.387741
Target:  5'- cGCGCCGAcGUGA-AGgAGU-UCGAGGCg -3'
miRNA:   3'- -CGCGGCU-CGCUgUCgUCGuGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 8855 0.67 0.387741
Target:  5'- -aGuCCGAGCGcCGGCccgaCGCCGuAGGCg -3'
miRNA:   3'- cgC-GGCUCGCuGUCGuc--GUGGC-UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.