miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18743 5' -53.2 NC_004682.1 + 36498 0.66 0.800254
Target:  5'- -cGCUUCGAga-GCGUCuucguagAGCUUCUCGg -3'
miRNA:   3'- gcUGGAGCUacgUGCAG-------UCGAAGAGC- -5'
18743 5' -53.2 NC_004682.1 + 27562 0.66 0.791399
Target:  5'- uCGAUccgCUCGAUGCGCuccguccgCAGCUcCUCGc -3'
miRNA:   3'- -GCUG---GAGCUACGUGca------GUCGAaGAGC- -5'
18743 5' -53.2 NC_004682.1 + 46876 0.67 0.781398
Target:  5'- uCGGCCUgGAUGCuggccAUGUCgAGCccgUCUUGg -3'
miRNA:   3'- -GCUGGAgCUACG-----UGCAG-UCGa--AGAGC- -5'
18743 5' -53.2 NC_004682.1 + 13666 0.67 0.771239
Target:  5'- uGACCUCGGUGgucaugggccaCACGcacCGGCUggggaUCUCGu -3'
miRNA:   3'- gCUGGAGCUAC-----------GUGCa--GUCGA-----AGAGC- -5'
18743 5' -53.2 NC_004682.1 + 42887 0.68 0.729245
Target:  5'- gCGAUCUCGAUGCccucuCGg-AGCUUCUg- -3'
miRNA:   3'- -GCUGGAGCUACGu----GCagUCGAAGAgc -5'
18743 5' -53.2 NC_004682.1 + 23715 0.68 0.696659
Target:  5'- aGACCUCGAUGUc--UCGGCcacggUCUCa -3'
miRNA:   3'- gCUGGAGCUACGugcAGUCGa----AGAGc -5'
18743 5' -53.2 NC_004682.1 + 26241 0.71 0.509484
Target:  5'- -cACCUCGGUGC-CGUCcgcgAGCUUC-CGg -3'
miRNA:   3'- gcUGGAGCUACGuGCAG----UCGAAGaGC- -5'
18743 5' -53.2 NC_004682.1 + 41334 0.72 0.467895
Target:  5'- aGACC-CGGUGCAgCGUCAGgaucaUCUCGg -3'
miRNA:   3'- gCUGGaGCUACGU-GCAGUCga---AGAGC- -5'
18743 5' -53.2 NC_004682.1 + 32965 0.72 0.467895
Target:  5'- uGGCCUCGAUGUagaACGUCGcGCUggcgugCUCc -3'
miRNA:   3'- gCUGGAGCUACG---UGCAGU-CGAa-----GAGc -5'
18743 5' -53.2 NC_004682.1 + 43270 0.74 0.372394
Target:  5'- gCGGCCUCGAUGCGCccGcCGGC--CUCGg -3'
miRNA:   3'- -GCUGGAGCUACGUG--CaGUCGaaGAGC- -5'
18743 5' -53.2 NC_004682.1 + 34677 0.74 0.354947
Target:  5'- cCGACCUCGccGCGCaUCGaCUUCUCGa -3'
miRNA:   3'- -GCUGGAGCuaCGUGcAGUcGAAGAGC- -5'
18743 5' -53.2 NC_004682.1 + 46173 1.1 0.001376
Target:  5'- uCGACCUCGAUGCACGUCAGCUUCUCGg -3'
miRNA:   3'- -GCUGGAGCUACGUGCAGUCGAAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.