Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18744 | 3' | -58.4 | NC_004682.1 | + | 24897 | 0.66 | 0.520436 |
Target: 5'- -aUCGACCgcaggacccggcuggAGGCGCAaccgcgccguGCGUCUGgcUGGGu -3' miRNA: 3'- agAGCUGG---------------UCCGCGU----------CGUAGAC--GCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 16120 | 0.66 | 0.513193 |
Target: 5'- gCUCuACCGGGCGCAccggcuggugacucGguUCcugaUGCGGGc -3' miRNA: 3'- aGAGcUGGUCCGCGU--------------CguAG----ACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 2666 | 0.66 | 0.516292 |
Target: 5'- gCUCGcCCGguguGGCgGCAGCGaccUCUGCcuGGGg -3' miRNA: 3'- aGAGCuGGU----CCG-CGUCGU---AGACG--CCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 14332 | 0.66 | 0.516292 |
Target: 5'- cCUCGACCuccGUGCGGCucuggaggcgCUGCGaGGc -3' miRNA: 3'- aGAGCUGGuc-CGCGUCGua--------GACGC-CC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 46969 | 0.66 | 0.551904 |
Target: 5'- cCUCcGCguGGCGCAGCAgcuuggcgaccugcuUCUGCa-- -3' miRNA: 3'- aGAGcUGguCCGCGUCGU---------------AGACGccc -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 23651 | 0.66 | 0.547672 |
Target: 5'- --cUGACCgacGGGCcuGCGGCccucCUGCGGGg -3' miRNA: 3'- agaGCUGG---UCCG--CGUCGua--GACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 33386 | 0.66 | 0.532945 |
Target: 5'- aUCUCG-CCguGGGCGCAGUAgcgcuucuccccgUUGgGGGc -3' miRNA: 3'- -AGAGCuGG--UCCGCGUCGUa------------GACgCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 36224 | 0.66 | 0.526677 |
Target: 5'- uUCUCGACCGcguuGuCGCGGUAcUgaGCGGGc -3' miRNA: 3'- -AGAGCUGGUc---C-GCGUCGU-AgaCGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 49287 | 0.66 | 0.495779 |
Target: 5'- cUUCGACCAGGaccCGCAGCAcgUCgccGCGu- -3' miRNA: 3'- aGAGCUGGUCC---GCGUCGU--AGa--CGCcc -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 40214 | 0.67 | 0.465727 |
Target: 5'- cUCUCGACCAGuggccacucGCGCccacccGCGaaugaUGCGGGg -3' miRNA: 3'- -AGAGCUGGUC---------CGCGu-----CGUag---ACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 16237 | 0.67 | 0.474645 |
Target: 5'- cCUCGGCguGGCGUcguuccuGGCG-CUGUGcGGa -3' miRNA: 3'- aGAGCUGguCCGCG-------UCGUaGACGC-CC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 43410 | 0.67 | 0.436648 |
Target: 5'- uUCcCGGCCAuGuaGUAGUccccgAUCUGCGGGg -3' miRNA: 3'- -AGaGCUGGU-CcgCGUCG-----UAGACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 48211 | 0.67 | 0.446226 |
Target: 5'- gUCUCGACCAGGaCGCcGGCcUCguauCGGc -3' miRNA: 3'- -AGAGCUGGUCC-GCG-UCGuAGac--GCCc -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 42537 | 0.67 | 0.446226 |
Target: 5'- --cCGACguGGCucgGCGGCGccUCUGCGGc -3' miRNA: 3'- agaGCUGguCCG---CGUCGU--AGACGCCc -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 47290 | 0.67 | 0.48566 |
Target: 5'- cCUCGGCCAGcGC-CAGgA-CUaGCGGGu -3' miRNA: 3'- aGAGCUGGUC-CGcGUCgUaGA-CGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 24026 | 0.68 | 0.427189 |
Target: 5'- gUCcCGcGCCAGGgacuCGCAccGCGUgCUGCGGGg -3' miRNA: 3'- -AGaGC-UGGUCC----GCGU--CGUA-GACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 30837 | 0.68 | 0.415077 |
Target: 5'- gCUCGGgagcgccuCCAGGCGCgacuucaccgucgcGGCAgucgcgUUGCGGGc -3' miRNA: 3'- aGAGCU--------GGUCCGCG--------------UCGUa-----GACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 28160 | 0.68 | 0.390606 |
Target: 5'- uUCUUGugC-GGUGUcGCG-CUGCGGGa -3' miRNA: 3'- -AGAGCugGuCCGCGuCGUaGACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 45743 | 0.7 | 0.323852 |
Target: 5'- -gUCGACCacggGGGuCGguGCGggUGCGGGa -3' miRNA: 3'- agAGCUGG----UCC-GCguCGUagACGCCC- -5' |
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18744 | 3' | -58.4 | NC_004682.1 | + | 33115 | 0.7 | 0.308549 |
Target: 5'- uUCUCGACCAGGC-CGGggauCAUCgGCuGGa -3' miRNA: 3'- -AGAGCUGGUCCGcGUC----GUAGaCGcCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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