miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18744 5' -56.6 NC_004682.1 + 39096 0.66 0.651264
Target:  5'- -aCCCAuCGGGAccuugcgggcgauccGCUGGACaaucgagguCUUCUCGAu -3'
miRNA:   3'- gaGGGU-GUCCU---------------UGACCUG---------GGAGAGCU- -5'
18744 5' -56.6 NC_004682.1 + 12176 0.66 0.640318
Target:  5'- aUCCCguaccugcgcuggucGCAGGAgcacgGCUGGGCUgucgUCUCGAu -3'
miRNA:   3'- gAGGG---------------UGUCCU-----UGACCUGGg---AGAGCU- -5'
18744 5' -56.6 NC_004682.1 + 37255 0.66 0.635937
Target:  5'- gUCCCaggagcGCGGGAACcGcauccgguaGACCUUCUCGGa -3'
miRNA:   3'- gAGGG------UGUCCUUGaC---------CUGGGAGAGCU- -5'
18744 5' -56.6 NC_004682.1 + 6441 0.66 0.614036
Target:  5'- -gUCCGCGuagcGGAACcGGGCCUUCUCu- -3'
miRNA:   3'- gaGGGUGU----CCUUGaCCUGGGAGAGcu -5'
18744 5' -56.6 NC_004682.1 + 31932 0.66 0.612942
Target:  5'- aUCCCACaucggagAGGAACUGauccguuguGGCCCUggCGAa -3'
miRNA:   3'- gAGGGUG-------UCCUUGAC---------CUGGGAgaGCU- -5'
18744 5' -56.6 NC_004682.1 + 47592 0.67 0.581323
Target:  5'- gCUCCCGgAGGAcgcGCUGGcgaCCggcCUCGGa -3'
miRNA:   3'- -GAGGGUgUCCU---UGACCug-GGa--GAGCU- -5'
18744 5' -56.6 NC_004682.1 + 5004 0.67 0.559709
Target:  5'- --gCCGCAGGGcuACUGGAUCUcgUUCGAc -3'
miRNA:   3'- gagGGUGUCCU--UGACCUGGGa-GAGCU- -5'
18744 5' -56.6 NC_004682.1 + 28450 0.68 0.517227
Target:  5'- aCUCCCACAGGuGCUuuGACCaagUCUgGAg -3'
miRNA:   3'- -GAGGGUGUCCuUGAc-CUGGg--AGAgCU- -5'
18744 5' -56.6 NC_004682.1 + 21765 0.68 0.510961
Target:  5'- uCUCCCgGCAGGAcgcuCUGGAuggcugagccgcuacUCCUCaUCGAg -3'
miRNA:   3'- -GAGGG-UGUCCUu---GACCU---------------GGGAG-AGCU- -5'
18744 5' -56.6 NC_004682.1 + 10395 0.68 0.506802
Target:  5'- aCUCcaCCACccGGAGCUGGACCCcaaCGAg -3'
miRNA:   3'- -GAG--GGUGu-CCUUGACCUGGGagaGCU- -5'
18744 5' -56.6 NC_004682.1 + 19640 0.71 0.322714
Target:  5'- gUCUCGCAGGAuCUGGugCC-CUaCGAg -3'
miRNA:   3'- gAGGGUGUCCUuGACCugGGaGA-GCU- -5'
18744 5' -56.6 NC_004682.1 + 20418 0.72 0.307282
Target:  5'- aUCCCACGGGcaugGACUaGGCCCUgggggCUCGAa -3'
miRNA:   3'- gAGGGUGUCC----UUGAcCUGGGA-----GAGCU- -5'
18744 5' -56.6 NC_004682.1 + 18623 0.72 0.292422
Target:  5'- -aCCCGCaAGGAGaUGGACCUgcUCUCGGu -3'
miRNA:   3'- gaGGGUG-UCCUUgACCUGGG--AGAGCU- -5'
18744 5' -56.6 NC_004682.1 + 46652 1.08 0.000772
Target:  5'- uCUCCCACAGGAACUGGACCCUCUCGAu -3'
miRNA:   3'- -GAGGGUGUCCUUGACCUGGGAGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.