miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18745 3' -55.9 NC_004682.1 + 30575 0.66 0.693891
Target:  5'- gGGCCAcG-CG-GCCCGUGCggucaucaGGUGGa -3'
miRNA:   3'- -CCGGUaCaGCuCGGGCAUGaa------CCGCU- -5'
18745 3' -55.9 NC_004682.1 + 29735 0.66 0.672145
Target:  5'- cGGgCGUgguaGUCGAcUCCGgucuggGCUUGGCGAa -3'
miRNA:   3'- -CCgGUA----CAGCUcGGGCa-----UGAACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 47682 0.66 0.639271
Target:  5'- cGCCGUGgu--GCCCG-AgUUGGCGGc -3'
miRNA:   3'- cCGGUACagcuCGGGCaUgAACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 43155 0.67 0.628286
Target:  5'- cGGuCCAggcgGUCGu-CCCGgccuuCUUGGCGAc -3'
miRNA:   3'- -CC-GGUa---CAGCucGGGCau---GAACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 48007 0.67 0.582297
Target:  5'- uGGCCAgugccuugaGGGCugCCGUGCgUGGCGAc -3'
miRNA:   3'- -CCGGUacag-----CUCG--GGCAUGaACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 10964 0.68 0.552
Target:  5'- cGCUccGUCGucGCCCGaACggGGCGAa -3'
miRNA:   3'- cCGGuaCAGCu-CGGGCaUGaaCCGCU- -5'
18745 3' -55.9 NC_004682.1 + 42562 0.68 0.541291
Target:  5'- cGGCCAacUGagUGAGUuuCCGgcgcUGCUUGGCGAu -3'
miRNA:   3'- -CCGGU--ACa-GCUCG--GGC----AUGAACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 1457 0.68 0.541291
Target:  5'- cGCCAgcggCGAGCCCGUcaACUUcccGGCa- -3'
miRNA:   3'- cCGGUaca-GCUCGGGCA--UGAA---CCGcu -5'
18745 3' -55.9 NC_004682.1 + 30421 0.69 0.468651
Target:  5'- aGGCCcgGUCGaAGCCguCGaccaccUGCUUGGCa- -3'
miRNA:   3'- -CCGGuaCAGC-UCGG--GC------AUGAACCGcu -5'
18745 3' -55.9 NC_004682.1 + 42680 0.69 0.458674
Target:  5'- cGGCUGggGUCGAucuGCuuGUGCgucUUGGCGAa -3'
miRNA:   3'- -CCGGUa-CAGCU---CGggCAUG---AACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 10634 0.71 0.40134
Target:  5'- uGGCCAcugGUCGAGagaCCUGUGCcUGGUGc -3'
miRNA:   3'- -CCGGUa--CAGCUC---GGGCAUGaACCGCu -5'
18745 3' -55.9 NC_004682.1 + 4891 0.71 0.392236
Target:  5'- gGGCUcgGU-GAGCCCGcgcUACUcgGGCGGc -3'
miRNA:   3'- -CCGGuaCAgCUCGGGC---AUGAa-CCGCU- -5'
18745 3' -55.9 NC_004682.1 + 50700 0.71 0.374434
Target:  5'- uGGCCcuGUGcCG-GCCCGUGCc-GGCGGu -3'
miRNA:   3'- -CCGG--UACaGCuCGGGCAUGaaCCGCU- -5'
18745 3' -55.9 NC_004682.1 + 39496 0.71 0.357189
Target:  5'- gGGCCGggaUGUgGAGCCUuucGCUUGGUGGu -3'
miRNA:   3'- -CCGGU---ACAgCUCGGGca-UGAACCGCU- -5'
18745 3' -55.9 NC_004682.1 + 46889 1.02 0.002755
Target:  5'- uGGCCAUGUCGAGCCCGU-CUUGGCGAu -3'
miRNA:   3'- -CCGGUACAGCUCGGGCAuGAACCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.