miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18745 5' -53.6 NC_004682.1 + 8674 0.66 0.780125
Target:  5'- ---aGCa--GGACGCGGCCUCgcggggCCGa -3'
miRNA:   3'- aaagCGguaCUUGUGCCGGAGaa----GGC- -5'
18745 5' -53.6 NC_004682.1 + 27979 0.66 0.773951
Target:  5'- ---gGCCAUGAugccaccgcgcaccaGCGCGGgcuccgggacCUUCUUCCGg -3'
miRNA:   3'- aaagCGGUACU---------------UGUGCC----------GGAGAAGGC- -5'
18745 5' -53.6 NC_004682.1 + 9734 0.66 0.759334
Target:  5'- -cUCGUCugaGAACcCGGCCUCggCUGa -3'
miRNA:   3'- aaAGCGGua-CUUGuGCCGGAGaaGGC- -5'
18745 5' -53.6 NC_004682.1 + 2953 0.66 0.727148
Target:  5'- --gCGCUcgGAGCACGGCagagCUgggacgCCGa -3'
miRNA:   3'- aaaGCGGuaCUUGUGCCGga--GAa-----GGC- -5'
18745 5' -53.6 NC_004682.1 + 4841 0.67 0.716202
Target:  5'- -gUgGUCAUGAACugGGUCgcgCcUCCGu -3'
miRNA:   3'- aaAgCGGUACUUGugCCGGa--GaAGGC- -5'
18745 5' -53.6 NC_004682.1 + 6827 0.67 0.716202
Target:  5'- -aUCGUCAUGAcgGCgACGGaCUUCUaCCGa -3'
miRNA:   3'- aaAGCGGUACU--UG-UGCC-GGAGAaGGC- -5'
18745 5' -53.6 NC_004682.1 + 15585 0.67 0.705168
Target:  5'- --aCGUUcgGcGGCACGGCCUCggggCCGc -3'
miRNA:   3'- aaaGCGGuaC-UUGUGCCGGAGaa--GGC- -5'
18745 5' -53.6 NC_004682.1 + 8652 0.67 0.682887
Target:  5'- --cCGCCGUcuGCGCGGuCCUCgcgUUCGg -3'
miRNA:   3'- aaaGCGGUAcuUGUGCC-GGAGa--AGGC- -5'
18745 5' -53.6 NC_004682.1 + 33388 0.67 0.671664
Target:  5'- -cUCGCCGUGGGCGCaguagcGCUUCUccCCGu -3'
miRNA:   3'- aaAGCGGUACUUGUGc-----CGGAGAa-GGC- -5'
18745 5' -53.6 NC_004682.1 + 14605 0.68 0.649111
Target:  5'- --cCGCCccgGUGGGCACGGCUgcg-CCGa -3'
miRNA:   3'- aaaGCGG---UACUUGUGCCGGagaaGGC- -5'
18745 5' -53.6 NC_004682.1 + 48713 0.69 0.548007
Target:  5'- -cUCGCCuucgGGGC-CGGCUUCU-CCGg -3'
miRNA:   3'- aaAGCGGua--CUUGuGCCGGAGAaGGC- -5'
18745 5' -53.6 NC_004682.1 + 36954 0.7 0.537006
Target:  5'- -gUCGaCCGUGAAC-CGGCCUCgguggaUCGg -3'
miRNA:   3'- aaAGC-GGUACUUGuGCCGGAGaa----GGC- -5'
18745 5' -53.6 NC_004682.1 + 18024 0.75 0.263686
Target:  5'- --gCGCCG-GGACGCGGCUaCUUCCGc -3'
miRNA:   3'- aaaGCGGUaCUUGUGCCGGaGAAGGC- -5'
18745 5' -53.6 NC_004682.1 + 31969 0.75 0.263686
Target:  5'- -cUCGCCAUGAagGCgACGGCCaUCUggaCCGg -3'
miRNA:   3'- aaAGCGGUACU--UG-UGCCGG-AGAa--GGC- -5'
18745 5' -53.6 NC_004682.1 + 37944 0.8 0.128188
Target:  5'- ---gGCCGUGAaucagccGCugGGCCUCUUCCa -3'
miRNA:   3'- aaagCGGUACU-------UGugCCGGAGAAGGc -5'
18745 5' -53.6 NC_004682.1 + 46927 1.07 0.001543
Target:  5'- cUUUCGCCAUGAACACGGCCUCUUCCGg -3'
miRNA:   3'- -AAAGCGGUACUUGUGCCGGAGAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.