Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18746 | 3' | -59.5 | NC_004682.1 | + | 47061 | 1.08 | 0.000399 |
Target: 5'- gACCCAUGACUCACCUAGCCGCCCGGAu -3' miRNA: 3'- -UGGGUACUGAGUGGAUCGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 30363 | 0.66 | 0.46137 |
Target: 5'- uGCCCGuucUGGCUCGCCU---CGCgCUGGAg -3' miRNA: 3'- -UGGGU---ACUGAGUGGAucgGCG-GGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 364 | 0.66 | 0.46137 |
Target: 5'- cCCCAagcGGCUCcCCUccgGGagCGCCCGGAg -3' miRNA: 3'- uGGGUa--CUGAGuGGA---UCg-GCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 33414 | 0.66 | 0.442009 |
Target: 5'- cCCCGUugggGGC-CuCCUgAGCCGCCUGGGg -3' miRNA: 3'- uGGGUA----CUGaGuGGA-UCGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 48284 | 0.66 | 0.442009 |
Target: 5'- uGCUCAUGGCUCugcaguCCcAGCCGCUCu-- -3' miRNA: 3'- -UGGGUACUGAGu-----GGaUCGGCGGGccu -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 37178 | 0.67 | 0.420325 |
Target: 5'- gGCCCAUGAC-CACCgagGucaugaacuucuucGCCGCgCCGaGGg -3' miRNA: 3'- -UGGGUACUGaGUGGa--U--------------CGGCG-GGC-CU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 4360 | 0.67 | 0.413854 |
Target: 5'- cGCUgGUGACcgccgUCACCgaagccGCCGCCaCGGGc -3' miRNA: 3'- -UGGgUACUG-----AGUGGau----CGGCGG-GCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 45909 | 0.67 | 0.38683 |
Target: 5'- cGCaCUcgGGCUCGCC--GUCGUCCGGGu -3' miRNA: 3'- -UG-GGuaCUGAGUGGauCGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 27856 | 0.68 | 0.352655 |
Target: 5'- cCCCcgGACcaGCCcgaaGGCCaGCCCGGAg -3' miRNA: 3'- uGGGuaCUGagUGGa---UCGG-CGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 23450 | 0.69 | 0.313025 |
Target: 5'- gGCCag-GACuUCACCgaggacGCCGUCCGGGa -3' miRNA: 3'- -UGGguaCUG-AGUGGau----CGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 9425 | 0.7 | 0.270043 |
Target: 5'- cACCCcgGAgCuucgcucggUCACCgacgcAGCUGCCCGGAc -3' miRNA: 3'- -UGGGuaCU-G---------AGUGGa----UCGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 20181 | 0.69 | 0.313025 |
Target: 5'- gGCCCAggaACUCcgcguCCUGGCCGCgcugucgggcgaCCGGAc -3' miRNA: 3'- -UGGGUac-UGAGu----GGAUCGGCG------------GGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 32487 | 0.68 | 0.336387 |
Target: 5'- gACCCGaGuaGCUCACCcAGCCucgGCCCGaGAa -3' miRNA: 3'- -UGGGUaC--UGAGUGGaUCGG---CGGGC-CU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 34155 | 0.68 | 0.336387 |
Target: 5'- aGCCCuccaGGCccaUCACCgcuGCCGCCCGa- -3' miRNA: 3'- -UGGGua--CUG---AGUGGau-CGGCGGGCcu -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 22974 | 0.67 | 0.386831 |
Target: 5'- aGCCCuccgGGCUgGCCUucgGGCUGgUCCGGGg -3' miRNA: 3'- -UGGGua--CUGAgUGGA---UCGGC-GGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 36666 | 0.67 | 0.399297 |
Target: 5'- gAUCCAggaGCcCACCUucacgucaggcagcGCCGCCCGGAg -3' miRNA: 3'- -UGGGUac-UGaGUGGAu-------------CGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 26224 | 0.67 | 0.423117 |
Target: 5'- aGCCCGUGGCguUCGCCgGGUCGgagUCGGAg -3' miRNA: 3'- -UGGGUACUG--AGUGGaUCGGCg--GGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 9923 | 0.66 | 0.46333 |
Target: 5'- uUCCGUGAggcgggugcugaUCACCggcagccgcgacugGGUCGCCCGGAc -3' miRNA: 3'- uGGGUACUg-----------AGUGGa-------------UCGGCGGGCCU- -5' |
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18746 | 3' | -59.5 | NC_004682.1 | + | 32404 | 0.7 | 0.250397 |
Target: 5'- gGCCugCAUGAuCUC-CUUGGCCGUCUGGAc -3' miRNA: 3'- -UGG--GUACU-GAGuGGAUCGGCGGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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