Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 3776 | 0.66 | 0.647328 |
Target: 5'- -aUCCGGGCGGCuaGGUgAGUcAUGGg -3' miRNA: 3'- acGGGCCUGCCGcaUCAgUCAcUACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 49016 | 0.67 | 0.603728 |
Target: 5'- cGCCCGGACGgGCGaacgCGGgUGA-GGa -3' miRNA: 3'- aCGGGCCUGC-CGCaucaGUC-ACUaCC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 45845 | 0.67 | 0.592864 |
Target: 5'- uUGCUCGccguaguaGGCGaGUucguaguuGUAGUCGGUGAUGGc -3' miRNA: 3'- -ACGGGC--------CUGC-CG--------CAUCAGUCACUACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 2962 | 0.67 | 0.560504 |
Target: 5'- gGCgCGGGCGGCGgcGcugggCAGUGGa-- -3' miRNA: 3'- aCGgGCCUGCCGCauCa----GUCACUacc -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 9457 | 0.68 | 0.554086 |
Target: 5'- cUGCCCGGACgcugaugcugaugcaGGCGacugCAGagcUGAUGGg -3' miRNA: 3'- -ACGGGCCUG---------------CCGCaucaGUC---ACUACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 47730 | 0.68 | 0.507788 |
Target: 5'- cGaCCCGuaacCGGCGaUGGUCgcGGUGGUGGg -3' miRNA: 3'- aC-GGGCcu--GCCGC-AUCAG--UCACUACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 27067 | 0.68 | 0.507788 |
Target: 5'- cGCCUGGACGGUGgAGUUGaucggcGUGAcGGc -3' miRNA: 3'- aCGGGCCUGCCGCaUCAGU------CACUaCC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 39471 | 0.69 | 0.487283 |
Target: 5'- gGCCCGGugGuGUGUAGcgCAccGUGGgccgGGa -3' miRNA: 3'- aCGGGCCugC-CGCAUCa-GU--CACUa---CC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 45725 | 0.7 | 0.418892 |
Target: 5'- cGCCaggauCGGcGCGGCGUcgaccacgggGGUCGGUGcgGGu -3' miRNA: 3'- aCGG-----GCC-UGCCGCA----------UCAGUCACuaCC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 26352 | 0.7 | 0.418892 |
Target: 5'- aUGCCagCGGuguCGGUGUAGUCGaUGAUGa -3' miRNA: 3'- -ACGG--GCCu--GCCGCAUCAGUcACUACc -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 40914 | 0.7 | 0.418892 |
Target: 5'- cUGCCUGG-CGGCGUAcGUCGGcgucGAcGGa -3' miRNA: 3'- -ACGGGCCuGCCGCAU-CAGUCa---CUaCC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 26802 | 0.72 | 0.316343 |
Target: 5'- gGCCCGuuCGG-GUAGUCGGUGAaccGGa -3' miRNA: 3'- aCGGGCcuGCCgCAUCAGUCACUa--CC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 44440 | 0.72 | 0.308705 |
Target: 5'- cGCCCGaGCGGgGUAGUUGccGAUGGg -3' miRNA: 3'- aCGGGCcUGCCgCAUCAGUcaCUACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 27383 | 0.75 | 0.199897 |
Target: 5'- -uCCCGGACGGCGUccUCGGUGAaguccUGGc -3' miRNA: 3'- acGGGCCUGCCGCAucAGUCACU-----ACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 46466 | 0.76 | 0.184564 |
Target: 5'- cGCCCGuGGCGGCGgcuUCGGUGAcGGc -3' miRNA: 3'- aCGGGC-CUGCCGCaucAGUCACUaCC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 16675 | 0.79 | 0.115957 |
Target: 5'- cGCUCGGGCGGC--AG-CGGUGAUGGg -3' miRNA: 3'- aCGGGCCUGCCGcaUCaGUCACUACC- -5' |
|||||||
18746 | 5' | -56.4 | NC_004682.1 | + | 47098 | 1.1 | 0.000708 |
Target: 5'- uUGCCCGGACGGCGUAGUCAGUGAUGGc -3' miRNA: 3'- -ACGGGCCUGCCGCAUCAGUCACUACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home