miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18746 5' -56.4 NC_004682.1 + 3776 0.66 0.647328
Target:  5'- -aUCCGGGCGGCuaGGUgAGUcAUGGg -3'
miRNA:   3'- acGGGCCUGCCGcaUCAgUCAcUACC- -5'
18746 5' -56.4 NC_004682.1 + 49016 0.67 0.603728
Target:  5'- cGCCCGGACGgGCGaacgCGGgUGA-GGa -3'
miRNA:   3'- aCGGGCCUGC-CGCaucaGUC-ACUaCC- -5'
18746 5' -56.4 NC_004682.1 + 45845 0.67 0.592864
Target:  5'- uUGCUCGccguaguaGGCGaGUucguaguuGUAGUCGGUGAUGGc -3'
miRNA:   3'- -ACGGGC--------CUGC-CG--------CAUCAGUCACUACC- -5'
18746 5' -56.4 NC_004682.1 + 2962 0.67 0.560504
Target:  5'- gGCgCGGGCGGCGgcGcugggCAGUGGa-- -3'
miRNA:   3'- aCGgGCCUGCCGCauCa----GUCACUacc -5'
18746 5' -56.4 NC_004682.1 + 9457 0.68 0.554086
Target:  5'- cUGCCCGGACgcugaugcugaugcaGGCGacugCAGagcUGAUGGg -3'
miRNA:   3'- -ACGGGCCUG---------------CCGCaucaGUC---ACUACC- -5'
18746 5' -56.4 NC_004682.1 + 27067 0.68 0.507788
Target:  5'- cGCCUGGACGGUGgAGUUGaucggcGUGAcGGc -3'
miRNA:   3'- aCGGGCCUGCCGCaUCAGU------CACUaCC- -5'
18746 5' -56.4 NC_004682.1 + 47730 0.68 0.507788
Target:  5'- cGaCCCGuaacCGGCGaUGGUCgcGGUGGUGGg -3'
miRNA:   3'- aC-GGGCcu--GCCGC-AUCAG--UCACUACC- -5'
18746 5' -56.4 NC_004682.1 + 39471 0.69 0.487283
Target:  5'- gGCCCGGugGuGUGUAGcgCAccGUGGgccgGGa -3'
miRNA:   3'- aCGGGCCugC-CGCAUCa-GU--CACUa---CC- -5'
18746 5' -56.4 NC_004682.1 + 45725 0.7 0.418892
Target:  5'- cGCCaggauCGGcGCGGCGUcgaccacgggGGUCGGUGcgGGu -3'
miRNA:   3'- aCGG-----GCC-UGCCGCA----------UCAGUCACuaCC- -5'
18746 5' -56.4 NC_004682.1 + 26352 0.7 0.418892
Target:  5'- aUGCCagCGGuguCGGUGUAGUCGaUGAUGa -3'
miRNA:   3'- -ACGG--GCCu--GCCGCAUCAGUcACUACc -5'
18746 5' -56.4 NC_004682.1 + 40914 0.7 0.418892
Target:  5'- cUGCCUGG-CGGCGUAcGUCGGcgucGAcGGa -3'
miRNA:   3'- -ACGGGCCuGCCGCAU-CAGUCa---CUaCC- -5'
18746 5' -56.4 NC_004682.1 + 26802 0.72 0.316343
Target:  5'- gGCCCGuuCGG-GUAGUCGGUGAaccGGa -3'
miRNA:   3'- aCGGGCcuGCCgCAUCAGUCACUa--CC- -5'
18746 5' -56.4 NC_004682.1 + 44440 0.72 0.308705
Target:  5'- cGCCCGaGCGGgGUAGUUGccGAUGGg -3'
miRNA:   3'- aCGGGCcUGCCgCAUCAGUcaCUACC- -5'
18746 5' -56.4 NC_004682.1 + 27383 0.75 0.199897
Target:  5'- -uCCCGGACGGCGUccUCGGUGAaguccUGGc -3'
miRNA:   3'- acGGGCCUGCCGCAucAGUCACU-----ACC- -5'
18746 5' -56.4 NC_004682.1 + 46466 0.76 0.184564
Target:  5'- cGCCCGuGGCGGCGgcuUCGGUGAcGGc -3'
miRNA:   3'- aCGGGC-CUGCCGCaucAGUCACUaCC- -5'
18746 5' -56.4 NC_004682.1 + 16675 0.79 0.115957
Target:  5'- cGCUCGGGCGGC--AG-CGGUGAUGGg -3'
miRNA:   3'- aCGGGCCUGCCGcaUCaGUCACUACC- -5'
18746 5' -56.4 NC_004682.1 + 47098 1.1 0.000708
Target:  5'- uUGCCCGGACGGCGUAGUCAGUGAUGGc -3'
miRNA:   3'- -ACGGGCCUGCCGCAUCAGUCACUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.